diff options
| author | Frederick Muriuki Muriithi | 2022-02-21 16:23:06 +0300 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2022-02-21 16:23:06 +0300 |
| commit | a35fce27875d9db80dce1976b6f8ee8c00ecfe0a (patch) | |
| tree | 8e8f815a6e3d37348bdb8f253f5ec53f72dc2dbc /gn3/api | |
| parent | c84b07b8c5ac0a42c0fab929c75823b30b548191 (diff) | |
| download | genenetwork3-a35fce27875d9db80dce1976b6f8ee8c00ecfe0a.tar.gz | |
Fix a myriad of linter issues
* Use `with` in place of plain `open`
* Use f-strings in place of `str.format()`
* Remove string interpolation from queries - provide data as query parameters
* other minor fixes
Diffstat (limited to 'gn3/api')
| -rw-r--r-- | gn3/api/correlation.py | 3 | ||||
| -rw-r--r-- | gn3/api/heatmaps.py | 3 |
2 files changed, 3 insertions, 3 deletions
diff --git a/gn3/api/correlation.py b/gn3/api/correlation.py index cbe01d8..00b3ad5 100644 --- a/gn3/api/correlation.py +++ b/gn3/api/correlation.py @@ -1,9 +1,10 @@ """Endpoints for running correlations""" import json +from functools import reduce + from flask import jsonify from flask import Blueprint from flask import request -from functools import reduce from flask import make_response from gn3.computations.correlations import compute_all_sample_correlation diff --git a/gn3/api/heatmaps.py b/gn3/api/heatmaps.py index 633a061..b2511c3 100644 --- a/gn3/api/heatmaps.py +++ b/gn3/api/heatmaps.py @@ -27,8 +27,7 @@ def clustered_heatmaps(): conn, _cursor = database_connector() def parse_trait_fullname(trait): name_parts = trait.split(":") - return "{dataset_name}::{trait_name}".format( - dataset_name=name_parts[1], trait_name=name_parts[0]) + return f"{name_parts[1]}::{name_parts[0]}" traits_fullnames = [parse_trait_fullname(trait) for trait in traits_names] with io.StringIO() as io_str: |