From a35fce27875d9db80dce1976b6f8ee8c00ecfe0a Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Mon, 21 Feb 2022 16:23:06 +0300
Subject: Fix a myriad of linter issues

* Use `with` in place of plain `open`
* Use f-strings in place of `str.format()`
* Remove string interpolation from queries - provide data as query parameters
* other minor fixes
---
 gn3/api/correlation.py | 3 ++-
 gn3/api/heatmaps.py    | 3 +--
 2 files changed, 3 insertions(+), 3 deletions(-)

(limited to 'gn3/api')

diff --git a/gn3/api/correlation.py b/gn3/api/correlation.py
index cbe01d8..00b3ad5 100644
--- a/gn3/api/correlation.py
+++ b/gn3/api/correlation.py
@@ -1,9 +1,10 @@
 """Endpoints for running correlations"""
 import json
+from functools import reduce
+
 from flask import jsonify
 from flask import Blueprint
 from flask import request
-from functools import reduce
 from flask import make_response
 
 from gn3.computations.correlations import compute_all_sample_correlation
diff --git a/gn3/api/heatmaps.py b/gn3/api/heatmaps.py
index 633a061..b2511c3 100644
--- a/gn3/api/heatmaps.py
+++ b/gn3/api/heatmaps.py
@@ -27,8 +27,7 @@ def clustered_heatmaps():
     conn, _cursor = database_connector()
     def parse_trait_fullname(trait):
         name_parts = trait.split(":")
-        return "{dataset_name}::{trait_name}".format(
-            dataset_name=name_parts[1], trait_name=name_parts[0])
+        return f"{name_parts[1]}::{name_parts[0]}"
     traits_fullnames = [parse_trait_fullname(trait) for trait in traits_names]
 
     with io.StringIO() as io_str:
-- 
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