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authorFrederick Muriuki Muriithi2022-02-21 16:23:06 +0300
committerFrederick Muriuki Muriithi2022-02-21 16:23:06 +0300
commita35fce27875d9db80dce1976b6f8ee8c00ecfe0a (patch)
tree8e8f815a6e3d37348bdb8f253f5ec53f72dc2dbc /gn3/api
parentc84b07b8c5ac0a42c0fab929c75823b30b548191 (diff)
downloadgenenetwork3-a35fce27875d9db80dce1976b6f8ee8c00ecfe0a.tar.gz
Fix a myriad of linter issues
* Use `with` in place of plain `open` * Use f-strings in place of `str.format()` * Remove string interpolation from queries - provide data as query parameters * other minor fixes
Diffstat (limited to 'gn3/api')
-rw-r--r--gn3/api/correlation.py3
-rw-r--r--gn3/api/heatmaps.py3
2 files changed, 3 insertions, 3 deletions
diff --git a/gn3/api/correlation.py b/gn3/api/correlation.py
index cbe01d8..00b3ad5 100644
--- a/gn3/api/correlation.py
+++ b/gn3/api/correlation.py
@@ -1,9 +1,10 @@
"""Endpoints for running correlations"""
import json
+from functools import reduce
+
from flask import jsonify
from flask import Blueprint
from flask import request
-from functools import reduce
from flask import make_response
from gn3.computations.correlations import compute_all_sample_correlation
diff --git a/gn3/api/heatmaps.py b/gn3/api/heatmaps.py
index 633a061..b2511c3 100644
--- a/gn3/api/heatmaps.py
+++ b/gn3/api/heatmaps.py
@@ -27,8 +27,7 @@ def clustered_heatmaps():
conn, _cursor = database_connector()
def parse_trait_fullname(trait):
name_parts = trait.split(":")
- return "{dataset_name}::{trait_name}".format(
- dataset_name=name_parts[1], trait_name=name_parts[0])
+ return f"{name_parts[1]}::{name_parts[0]}"
traits_fullnames = [parse_trait_fullname(trait) for trait in traits_names]
with io.StringIO() as io_str: