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authorzsloan2021-08-26 20:17:14 +0000
committerzsloan2022-03-22 19:08:01 +0000
commit40e85090b60ef002723b614fd712b6affbd68176 (patch)
tree9ac636b79491033c771cbe1f0d2bfee1e53be882 /gn3/api
parent35f0784ee32ccc76416d184ac65e8cad6f7aa490 (diff)
downloadgenenetwork3-40e85090b60ef002723b614fd712b6affbd68176.tar.gz
Added genofile name to inputs for processing R/qtl pair-scan results, since it's needed to store the proximal/distal markers for each position
Diffstat (limited to 'gn3/api')
-rw-r--r--gn3/api/rqtl.py2
1 files changed, 1 insertions, 1 deletions
diff --git a/gn3/api/rqtl.py b/gn3/api/rqtl.py
index abce705..9aab9fa 100644
--- a/gn3/api/rqtl.py
+++ b/gn3/api/rqtl.py
@@ -49,7 +49,7 @@ run the rqtl_wrapper script and return the results as JSON
os.system(rqtl_cmd.get('rqtl_cmd'))
if "pairscan" in boolean_kwargs:
- rqtl_output['results'] = process_rqtl_pairscan(rqtl_cmd.get('output_file'))
+ rqtl_output['results'] = process_rqtl_pairscan(rqtl_cmd.get('output_file'), genofile)
else:
rqtl_output['results'] = process_rqtl_mapping(rqtl_cmd.get('output_file'))