From 40e85090b60ef002723b614fd712b6affbd68176 Mon Sep 17 00:00:00 2001
From: zsloan
Date: Thu, 26 Aug 2021 20:17:14 +0000
Subject: Added genofile name to inputs for processing R/qtl pair-scan results,
 since it's needed to store the proximal/distal markers for each position

---
 gn3/api/rqtl.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'gn3/api')

diff --git a/gn3/api/rqtl.py b/gn3/api/rqtl.py
index abce705..9aab9fa 100644
--- a/gn3/api/rqtl.py
+++ b/gn3/api/rqtl.py
@@ -49,7 +49,7 @@ run the rqtl_wrapper script and return the results as JSON
         os.system(rqtl_cmd.get('rqtl_cmd'))
 
     if "pairscan" in boolean_kwargs:
-        rqtl_output['results'] = process_rqtl_pairscan(rqtl_cmd.get('output_file'))
+        rqtl_output['results'] = process_rqtl_pairscan(rqtl_cmd.get('output_file'), genofile)
     else:
         rqtl_output['results'] = process_rqtl_mapping(rqtl_cmd.get('output_file'))
 
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