Add rqtl.py for rqtl endpoints

1 files changed, 19 insertions, 0 deletions

diff --git a/gn3/api/rqtl.py b/gn3/api/rqtl.py
new file mode 100644
index 0000000..8dd4bb7
--- /dev/null
+++ b/gn3/api/rqtl.py
@@ -0,0 +1,19 @@
+import os
+
+from flask import Blueprint
+from flask import current_app
+from flask import request
+
+rqtl = Blueprint("rqtl", __name__)
+
+@rqtl.route("/compute", methods=["POST"])
+def compute():
+    working_dir = os.path.join(current_app.config.get("TMPDIR"))
+
+    genofile = request.form['geno_file']
+    phenofile = request.form['pheno_file']
+
+    if not do_paths_exist([genofile, phenofile]):
+        raise FileNotFoundError
+
+    return current_app.config.get("RQTL_WRAPPER_CMD")
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