From 9b628abcee86ef29e869b92a66b6034c1b63359d Mon Sep 17 00:00:00 2001
From: zsloan
Date: Mon, 17 May 2021 20:11:15 +0000
Subject: Add rqtl.py for rqtl endpoints

---
 gn3/api/rqtl.py | 19 +++++++++++++++++++
 1 file changed, 19 insertions(+)
 create mode 100644 gn3/api/rqtl.py

(limited to 'gn3/api/rqtl.py')

diff --git a/gn3/api/rqtl.py b/gn3/api/rqtl.py
new file mode 100644
index 0000000..8dd4bb7
--- /dev/null
+++ b/gn3/api/rqtl.py
@@ -0,0 +1,19 @@
+import os
+
+from flask import Blueprint
+from flask import current_app
+from flask import request
+
+rqtl = Blueprint("rqtl", __name__)
+
+@rqtl.route("/compute", methods=["POST"])
+def compute():
+    working_dir = os.path.join(current_app.config.get("TMPDIR"))
+
+    genofile = request.form['geno_file']
+    phenofile = request.form['pheno_file']
+
+    if not do_paths_exist([genofile, phenofile]):
+        raise FileNotFoundError
+
+    return current_app.config.get("RQTL_WRAPPER_CMD")
\ No newline at end of file
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