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| author | Munyoki Kilyungi | 2023-10-24 12:43:01 +0300 |
|---|---|---|
| committer | BonfaceKilz | 2023-10-27 13:45:32 +0300 |
| commit | e9b74f85c4626d42ec933e6e2dd08f16edc456c5 (patch) | |
| tree | 58feedfce1490d91e8c5757e08d710325a4add8d /gn3/api/metadata.py | |
| parent | 56c431064190f1783944b97a330adb32f933e294 (diff) | |
| download | genenetwork3-e9b74f85c4626d42ec933e6e2dd08f16edc456c5.tar.gz | |
Implement "GET /group/:name".
* gn3/api/metadata.py (fetch_group_by_species): New end-point.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
Diffstat (limited to 'gn3/api/metadata.py')
| -rw-r--r-- | gn3/api/metadata.py | 42 |
1 files changed, 42 insertions, 0 deletions
diff --git a/gn3/api/metadata.py b/gn3/api/metadata.py index 2b0ad6c..0c5e0a6 100644 --- a/gn3/api/metadata.py +++ b/gn3/api/metadata.py @@ -750,6 +750,48 @@ CONSTRUCT { "shortName": "gnt:shortName", "code": "gnt:code", "mappingMethod": "gnt:mappingMethod", +@metadata.route("/groups/<name>", methods=["GET"]) +def fetch_group_by_species(name): + """Fetch the list of groups""" + try: + sparql = SPARQLWrapper(current_app.config.get("SPARQL_ENDPOINT")) + sparql.setQuery(Template(""" +$prefix + +CONSTRUCT { + ?group ?predicate ?object . +} WHERE { + ?species gnt:shortName "$name" ; + ^skos:member gnc:Species . + ?group ^skos:member gnc:Set ; + xkos:generalizes ?species ; + ?predicate ?object . + VALUES ?predicate { + rdfs:label skos:prefLabel + gnt:geneticType gnt:mappingMethod + gnt:code gnt:family + } + +} +""").substitute(prefix=RDF_PREFIXES, name=name)) + results = sparql.queryAndConvert() + results = json.loads( + results.serialize(format="json-ld") + ) + return jsonld.compact(results, { + "@context": { + "data": "@graph", + "type": "@type", + "id": "@id", + "skos": "http://www.w3.org/2004/02/skos/core#", + "gnt": "http://genenetwork.org/term/", + "rdfs": "http://www.w3.org/2000/01/rdf-schema#", + "name": "rdfs:label", + "family": "gnt:family", + "shortName": "gnt:shortName", + "code": "gnt:code", + "mappingMethod": "gnt:mappingMethod", + "geneticType": "gnt:geneticType", "fullName": "skos:prefLabel", }, }) |