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authorArun Isaac2023-01-18 01:04:24 +0000
committerArun Isaac2023-01-18 01:15:48 +0000
commitf4eb5d21f33d0dc8449d9d326f01d0687472cf4d (patch)
tree78d650d5040655a60b5b30eb20ca3261d91ffaba /docs
parentd4af1981e80614b4e1b8c1570b5d80d9bfbe6b67 (diff)
downloadgenenetwork3-f4eb5d21f33d0dc8449d9d326f01d0687472cf4d.tar.gz
Implement synteny search.
* gn3/api/search.py: Import gzip, Path from pathlib and curry from pymonad.tools. (IntervalLiftoverFunction): New variable. (query_subqueries, query_terms, field_processor_or, liftover, liftover_interval, parse_synteny_field, is_synteny_on, remove_synteny_field): New functions. (parse_location_field): Generalize to support synteny searches. (parse_query): Support synteny search queries. (search_results): Pass synteny files directory to parse_query.
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