delete unwanted correlation stuff (#5)

* delete unwanted correlation stuff

* Refactor/clean up correlations (#4)

* initial commit for Refactor/clean-up-correlation

* add python scipy dependency

* initial commit for sample correlation

* initial commit for sample correlation endpoint

* initial commit for integration and unittest

* initial commit for registering  correlation blueprint

* add and modify unittest and integration tests for correlation

* Add compute compute_all_sample_corr   method for correlation

* add scipy to requirement txt file

* add tissue correlation for trait list

* add unittest for tissue correlation

* add lit correlation for trait list

* add unittests for lit correlation for trait list

* modify lit correlarion for trait list

* add unittests for lit correlation for trait list

* add correlation metho  in dynamic url

* add file format for expected structure input  while doing sample correlation

* modify input data structure -> add  trait id

* update tests for sample r correlation

* add compute all lit correlation method

* add endpoint for computing lit_corr

* add unit and integration tests for computing lit corr

* add /api/correlation/tissue_corr/{corr_method} endpoint for tissue correlation

* add unittest and integration tests for tissue correlation

Co-authored-by: BonfaceKilz <bonfacemunyoki@gmail.com>

* update guix scm file

* fix pylint error for correlations api

Co-authored-by: BonfaceKilz <bonfacemunyoki@gmail.com>

1 files changed, 0 insertions, 18 deletions

diff --git a/default_settings.py b/default_settings.py
deleted file mode 100644
index 9cdc665..0000000
--- a/default_settings.py
+++ /dev/null
@@ -1,18 +0,0 @@
-"""module contains default settings for genenetwork"""
-import os
-
-
-USE_REDIS = True
-
-GN2_BASE_URL = "https://genenetwork.org/"
-
-
-HOME = os.environ['HOME']
-
-# SQL_URI = "mysql://gn2:mysql_password@localhost/db_webqtl_s"
-
-SQL_URI = os.environ.get("SQL_URI","mysql+pymysql://kabui:1234@localhost/db_webqtl")
-
-SECRET_HMAC_CODE = '\x08\xdf\xfa\x93N\x80\xd9\\H@\\\x9f`\x98d^\xb4a;\xc6OM\x946a\xbc\xfc\x80:*\xebc'
-
-GENENETWORK_FILES = os.environ.get("GENENETWORK_FILES",HOME+"/data/genotype_files")