From 56ce88ad31dec3cece63e9370ca4e4c02139753b Mon Sep 17 00:00:00 2001 From: Alexander Kabui Date: Tue, 16 Mar 2021 11:38:13 +0300 Subject: delete unwanted correlation stuff (#5) * delete unwanted correlation stuff * Refactor/clean up correlations (#4) * initial commit for Refactor/clean-up-correlation * add python scipy dependency * initial commit for sample correlation * initial commit for sample correlation endpoint * initial commit for integration and unittest * initial commit for registering correlation blueprint * add and modify unittest and integration tests for correlation * Add compute compute_all_sample_corr method for correlation * add scipy to requirement txt file * add tissue correlation for trait list * add unittest for tissue correlation * add lit correlation for trait list * add unittests for lit correlation for trait list * modify lit correlarion for trait list * add unittests for lit correlation for trait list * add correlation metho in dynamic url * add file format for expected structure input while doing sample correlation * modify input data structure -> add trait id * update tests for sample r correlation * add compute all lit correlation method * add endpoint for computing lit_corr * add unit and integration tests for computing lit corr * add /api/correlation/tissue_corr/{corr_method} endpoint for tissue correlation * add unittest and integration tests for tissue correlation Co-authored-by: BonfaceKilz * update guix scm file * fix pylint error for correlations api Co-authored-by: BonfaceKilz --- default_settings.py | 18 ------------------ 1 file changed, 18 deletions(-) delete mode 100644 default_settings.py (limited to 'default_settings.py') diff --git a/default_settings.py b/default_settings.py deleted file mode 100644 index 9cdc665..0000000 --- a/default_settings.py +++ /dev/null @@ -1,18 +0,0 @@ -"""module contains default settings for genenetwork""" -import os - - -USE_REDIS = True - -GN2_BASE_URL = "https://genenetwork.org/" - - -HOME = os.environ['HOME'] - -# SQL_URI = "mysql://gn2:mysql_password@localhost/db_webqtl_s" - -SQL_URI = os.environ.get("SQL_URI","mysql+pymysql://kabui:1234@localhost/db_webqtl") - -SECRET_HMAC_CODE = '\x08\xdf\xfa\x93N\x80\xd9\\H@\\\x9f`\x98d^\xb4a;\xc6OM\x946a\xbc\xfc\x80:*\xebc' - -GENENETWORK_FILES = os.environ.get("GENENETWORK_FILES",HOME+"/data/genotype_files") -- cgit v1.2.3