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| author | Frederick Muriuki Muriithi | 2023-07-12 13:50:34 +0300 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2023-07-12 13:50:34 +0300 |
| commit | f920f9ad6d74648a0f572f3e937cfe1ea6578b3f (patch) | |
| tree | a942f90787227a2aff50a0acdba9ccf030fdd09a | |
| parent | d5bb32d0c09617a47732064a95c33bf53a2e7c13 (diff) | |
| download | genenetwork3-f920f9ad6d74648a0f572f3e937cfe1ea6578b3f.tar.gz | |
Bug: Retrieve configs from app, not environment
Retrieve the configuration values from the application object, not from the environment. We are assured of having the configuration values set in the application - we do not have that assurance for the environment.
| -rw-r--r-- | gn3/db/datasets.py | 4 |
1 files changed, 3 insertions, 1 deletions
diff --git a/gn3/db/datasets.py b/gn3/db/datasets.py index 8839f2e..28fe0fe 100644 --- a/gn3/db/datasets.py +++ b/gn3/db/datasets.py @@ -4,6 +4,8 @@ This module contains functions relating to specific trait dataset manipulation import os from typing import Any +from flask import current_app as app + def retrieve_sample_list(group: str): """ Get the sample list for a group (a category that datasets belong to) @@ -14,7 +16,7 @@ def retrieve_sample_list(group: str): samplelist = [] genofile_path = ( - f'{os.environ.get("GENENETWORK_FILES", "/home/gn2/production/genotype_files/")}' + f'{app.config.get("GENENETWORK_FILES", "/home/gn2/production/genotype_files/")}' f'/genotype/{group}.geno' ) if os.path.isfile(genofile_path): |