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authorFrederick Muriuki Muriithi2023-10-06 11:53:02 +0300
committerFrederick Muriuki Muriithi2023-10-06 11:53:02 +0300
commite4af0bbac585b46a5d6303d752cea18ca527d676 (patch)
treec7a222790258248866dfec725df4ecc8e21ee209
parent0dfa02d39eeb7abdd9694c4a4829d45c537a2a51 (diff)
downloadgenenetwork3-e4af0bbac585b46a5d6303d752cea18ca527d676.tar.gz
pylint: fix variable name.
-rw-r--r--gn3/computations/rust_correlation.py10
1 files changed, 5 insertions, 5 deletions
diff --git a/gn3/computations/rust_correlation.py b/gn3/computations/rust_correlation.py
index 1ae26b8..5ce097d 100644
--- a/gn3/computations/rust_correlation.py
+++ b/gn3/computations/rust_correlation.py
@@ -54,19 +54,19 @@ def run_correlation(
     """entry function to call rust correlation"""
 
     # pylint: disable=too-many-arguments
-    CORRELATION_COMMAND = current_app.config["CORRELATION_COMMAND"] # make arg?
+    correlation_command = current_app.config["CORRELATION_COMMAND"] # make arg?
     (tmp_dir, tmp_file) = generate_input_files(dataset)
     (output_file, json_file) = generate_json_file(
         tmp_dir=tmp_dir, tmp_file=tmp_file, method=method, delimiter=delimiter,
         x_vals=trait_vals)
-    command_list = [CORRELATION_COMMAND, json_file, TMPDIR]
+    command_list = [correlation_command, json_file, TMPDIR]
     try:
         subprocess.run(command_list, check=True, capture_output=True)
     except subprocess.CalledProcessError as cpe:
         actual_command = (
-            os.readlink(CORRELATION_COMMAND)
-            if os.path.islink(CORRELATION_COMMAND)
-            else CORRELATION_COMMAND)
+            os.readlink(correlation_command)
+            if os.path.islink(correlation_command)
+            else correlation_command)
         raise Exception(command_list, actual_command, cpe.stdout) from cpe
 
     return parse_correlation_output(output_file, corr_type, top_n)