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author | Frederick Muriuki Muriithi | 2023-09-07 15:51:14 +0300 |
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committer | Frederick Muriuki Muriithi | 2023-10-10 11:12:50 +0300 |
commit | df0ac11ff12d1f4c0176ef86f06ce4c7ac26c99e (patch) | |
tree | 6df9180f4a889d4cb1551e526911a54c61edd5ed | |
parent | 3e06396c8966250540e72f7fa909b78dd10a5534 (diff) | |
download | genenetwork3-df0ac11ff12d1f4c0176ef86f06ce4c7ac26c99e.tar.gz |
Update imports
Update imports after removing the authentication from GN3
-rw-r--r-- | gn3/case_attributes.py | 14 |
1 files changed, 8 insertions, 6 deletions
diff --git a/gn3/case_attributes.py b/gn3/case_attributes.py index 04df030..695298a 100644 --- a/gn3/case_attributes.py +++ b/gn3/case_attributes.py @@ -14,10 +14,9 @@ from gn3.commands import run_cmd from gn3.db_utils import Connection, database_connection -from gn3.auth.authentication.users import User -from gn3.auth.authentication.oauth2.resource_server import require_oauth - +from gn3.auth.authorisation.users import User from gn3.auth.authorisation.errors import AuthorisationError +from gn3.auth.authorisation.oauth2.resource_server import require_oauth caseattr = Blueprint("case-attribute", __name__) @@ -154,8 +153,8 @@ def __process_edit_data__(fieldnames, form_data) -> tuple[dict, ...]: def __write_csv__(fieldnames, data): """Write the given `data` to a csv file and return the path to the file.""" - fd, filepath = tempfile.mkstemp(".csv") - os.close(fd) + fdesc, filepath = tempfile.mkstemp(".csv") + os.close(fdesc) with open(filepath, "w", encoding="utf-8") as csvfile: writer = csv.DictWriter(csvfile, fieldnames=fieldnames, dialect="unix") writer.writeheader() @@ -163,7 +162,10 @@ def __write_csv__(fieldnames, data): return filepath -def __compute_diff__(fieldnames: tuple[str, ...], original_data: tuple[dict, ...], edit_data: tuple[dict, ...]): +def __compute_diff__( + fieldnames: tuple[str, ...], + original_data: tuple[dict, ...], + edit_data: tuple[dict, ...]): """Return the diff of the data.""" basefilename = __write_csv__(fieldnames, original_data) deltafilename = __write_csv__(fieldnames, edit_data) |