diff options
| author | Munyoki Kilyungi | 2025-07-16 22:47:52 +0300 |
|---|---|---|
| committer | BonfaceKilz | 2025-07-16 22:50:04 +0300 |
| commit | dcf7fc73bc77269492ec844641f5654b16789431 (patch) | |
| tree | 56707c129314ece5884eb6ee5c02312216e21c49 | |
| parent | 4cce892e2249d52e3d3586703ece7bf4fb99127e (diff) | |
| download | genenetwork3-dcf7fc73bc77269492ec844641f5654b16789431.tar.gz | |
Add kludge comment for "HSNIH-Palmer_true.geno" which has floats.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| -rw-r--r-- | scripts/lmdb_matrix.py | 7 |
1 files changed, 6 insertions, 1 deletions
diff --git a/scripts/lmdb_matrix.py b/scripts/lmdb_matrix.py index c9bb097..02981f0 100644 --- a/scripts/lmdb_matrix.py +++ b/scripts/lmdb_matrix.py @@ -317,7 +317,12 @@ def read_genotype_file(genotype_file: str) -> GenotypeMatrix: case _ if unknown == el: matrix[i, j] = 3 case _: - raise ValueError + # KLUDGE: It's not clear how to handle float + # types in a geno file + # E.g. HSNIH-Palmer_true.geno which has float + # values such as: 0.997. Ideally maybe: + # raise ValueError + continue i += 1 __map = dict(zip(metadata_columns, meta)) for key in metadata_columns: |