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author | Frederick Muriuki Muriithi | 2023-08-28 10:51:29 +0300 |
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committer | Frederick Muriuki Muriithi | 2023-10-10 11:12:46 +0300 |
commit | b986218172d8dedbf027bdb65c573e54597674d8 (patch) | |
tree | dd4a6bef68a0a7f6294c5e0adeb9fd87a909e80a | |
parent | d8f22144360b22a0ea0f6d81e366150865bbe5fb (diff) | |
download | genenetwork3-b986218172d8dedbf027bdb65c573e54597674d8.tar.gz |
Extract fetching of case-attribute names
Extract the fetching of case-attribute names into a separate function that can
be used elsewhere.
-rw-r--r-- | gn3/case_attributes.py | 17 |
1 files changed, 11 insertions, 6 deletions
diff --git a/gn3/case_attributes.py b/gn3/case_attributes.py index 67bb407..78fc579 100644 --- a/gn3/case_attributes.py +++ b/gn3/case_attributes.py @@ -13,15 +13,20 @@ from gn3.auth.authorisation.errors import AuthorisationError caseattr = Blueprint("case-attribute", __name__) -@caseattr.route("/<int:inbredset_id>/names", methods=["GET"]) -def inbredset_case_attribute_names(inbredset_id: int) -> Response: - """Retrieve ALL case-attributes for a specific InbredSet group.""" - with (database_connection(current_app.config["SQL_URI"]) as conn, - conn.cursor(cursorclass=DictCursor) as cursor): +def __case_attribute_labels_by_inbred_set__(conn, inbredset_id): + """Return the case-attribute labels/names for the given InbredSet group.""" + with conn.cursor(cursorclass=DictCursor) as cursor: cursor.execute( "SELECT * FROM CaseAttribute WHERE InbredSetId=%(inbredset_id)s", {"inbredset_id": inbredset_id}) - return jsonify(tuple(dict(row) for row in cursor.fetchall())) + return tuple(dict(row) for row in cursor.fetchall()) + +@caseattr.route("/<int:inbredset_id>/names", methods=["GET"]) +def inbredset_case_attribute_names(inbredset_id: int) -> Response: + """Retrieve ALL case-attributes for a specific InbredSet group.""" + with database_connection(current_app.config["SQL_URI"]) as conn: + return jsonify( + __case_attribute_labels_by_inbred_set__(conn, inbredset_id)) def __by_strain__(accumulator, item): attr = {item["CaseAttributeName"]: item["CaseAttributeValue"]} |