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| author | zsloan | 2023-08-17 19:35:22 +0000 |
|---|---|---|
| committer | zsloan | 2023-08-17 14:54:42 -0500 |
| commit | a74f8e4cd312fe68125868776b1cc21182ae4718 (patch) | |
| tree | 1c92d097156f004484ed7ebd31d86109c7a65341 | |
| parent | c764d08e02c19395a48a6bad985ff3f8d0d2f9fe (diff) | |
| download | genenetwork3-a74f8e4cd312fe68125868776b1cc21182ae4718.tar.gz | |
Fix a couple remaining issues with function parameters
| -rw-r--r-- | gn3/db/sample_data.py | 14 |
1 files changed, 7 insertions, 7 deletions
diff --git a/gn3/db/sample_data.py b/gn3/db/sample_data.py index 07810e0..4cf1058 100644 --- a/gn3/db/sample_data.py +++ b/gn3/db/sample_data.py @@ -421,7 +421,7 @@ def delete_sample_data( conn=conn, probeset_id=int(probeset_id), dataset_name=dataset_name, - strain_name=extract_strain_name(csv_header, original_data), + strain_name=extract_strain_name(csv_header, data), ) none_case_attrs: Dict[str, Any] = { "Strain Name": lambda: 0, @@ -434,7 +434,7 @@ def delete_sample_data( conn=conn, publishxref_id=int(trait_name), phenotype_id=phenotype_id, - strain_name=extract_strain_name(csv_header, original_data), + strain_name=extract_strain_name(csv_header, data), ) none_case_attrs: Dict[str, Any] = { "Strain Name": lambda: 0, @@ -527,7 +527,7 @@ def insert_sample_data( conn=conn, probeset_id=int(probeset_id), dataset_name=dataset_name, - strain_name=extract_strain_name(csv_header, original_data), + strain_name=extract_strain_name(csv_header, data), ) none_case_attrs: Dict[str, Any] = { "Strain Name": lambda _: 0, @@ -540,13 +540,13 @@ def insert_sample_data( conn=conn, publishxref_id=int(trait_name), phenotype_id=phenotype_id, - strain_name=extract_strain_name(csv_header, original_data), + strain_name=extract_strain_name(csv_header, data), ) none_case_attrs: Dict[str, Any] = { "Strain Name": lambda _: 0, - "Value": lambda: __insert_data(conn, "PublishData", x), - "SE": lambda: __insert_data(conn, "PublishSE", x), - "Count": lambda: __insert_data(conn, "NStrain", x), + "Value": lambda x: __insert_data(conn, "PublishData", x), + "SE": lambda x: __insert_data(conn, "PublishSE", x), + "Count": lambda x: __insert_data(conn, "NStrain", x), } try: |