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authorMunyoki Kilyungi2024-08-29 23:18:21 +0300
committerBonfaceKilz2024-09-05 16:39:14 +0300
commit6e69b99f36a72079ff0b483f8dce4af0a4c06457 (patch)
treebe94d501562157fbe0fbe28f2e1efc9572b94c1e
parentab4e918da28ec09bf39ad38d79200b68baf28f17 (diff)
downloadgenenetwork3-6e69b99f36a72079ff0b483f8dce4af0a4c06457.tar.gz
Create global wiki context usable by all functions in gn3.rdf.wiki
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
-rw-r--r--gn3/db/rdf/wiki.py44
1 files changed, 23 insertions, 21 deletions
diff --git a/gn3/db/rdf/wiki.py b/gn3/db/rdf/wiki.py
index 1fc3130..f902455 100644
--- a/gn3/db/rdf/wiki.py
+++ b/gn3/db/rdf/wiki.py
@@ -6,6 +6,28 @@ from gn3.db.rdf import (BASE_CONTEXT, RDF_PREFIXES,
query_frame_and_compact)
+WIKI_CONTEXT = BASE_CONTEXT | {
+ "foaf": "http://xmlns.com/foaf/0.1/",
+ "dct": "http://purl.org/dc/terms/",
+ "categories": "gnt:belongsToCategory",
+ "web_url": "foaf:homepage",
+ "version": "gnt:hasVersion",
+ "symbol": "rdfs:label",
+ "reason": "gnt:reason",
+ "species": "gnt:species",
+ "pubmed_id": "dct:references",
+ "email": "foaf:mbox",
+ "initial": "gnt:initial",
+ "comment": "rdfs:comment",
+ "created": "dct:created",
+ "id": "dct:identifier",
+ # This points to the RDF Node which is the unique identifier
+ # for this triplet. It's constructed using the comment-id and
+ # the comment-versionId
+ "wiki_identifier": "@id",
+}
+
+
def get_wiki_entries_by_symbol(symbol: str, sparql_uri: str) -> dict:
"""Fetch all the Wiki entries using the symbol"""
# This query uses a sub-query to fetch the latest comment by the
@@ -61,28 +83,8 @@ CONSTRUCT {
BIND (str(?createTime) AS ?created) .
}
""").substitute(prefix=RDF_PREFIXES, symbol=symbol,)
- context = BASE_CONTEXT | {
- "foaf": "http://xmlns.com/foaf/0.1/",
- "dct": "http://purl.org/dc/terms/",
- "categories": "gnt:belongsToCategory",
- "web_url": "foaf:homepage",
- "version": "gnt:hasVersion",
- "symbol": "rdfs:label",
- "reason": "gnt:reason",
- "species": "gnt:species",
- "pubmed_id": "dct:references",
- "email": "foaf:mbox",
- "initial": "gnt:initial",
- "comment": "rdfs:comment",
- "created": "dct:created",
- "id": "dct:identifier",
- # This points to the RDF Node which is the unique identifier
- # for this triplet. It's constructed using the comment-id and
- # the comment-versionId
- "wiki_identifier": "@id",
- }
results = query_frame_and_compact(
- query, context,
+ query, WIKI_CONTEXT,
sparql_uri
)
data = results.get("data")