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authorBonfaceKilz2022-06-21 10:51:22 +0300
committerBonfaceKilz2022-06-21 11:04:33 +0300
commitc11d7605f99a9cb901265dc02729c346338ea709 (patch)
tree59f17d58e4cb171e4f899138a46a4830b4c1de64
parentb985c411980660fd0ce73d7a9be5cb7599f7eb5f (diff)
downloadgenenetwork3-c11d7605f99a9cb901265dc02729c346338ea709.tar.gz
db: correlations: Ignore types
* gn3/db/correlations.py (__build_query__): Ignore the "sample_ids" and "joins" types when calling build_query_sgo_lit_corr (fetch_all_database_data): Ignore the return type. TODO: Ping Alex/Arun to fix this.
-rw-r--r--gn3/db/correlations.py8
1 files changed, 6 insertions, 2 deletions
diff --git a/gn3/db/correlations.py b/gn3/db/correlations.py
index 07eaa56..ba61bb0 100644
--- a/gn3/db/correlations.py
+++ b/gn3/db/correlations.py
@@ -502,7 +502,11 @@ def __build_query__(
for item in sample_ids)
if method.lower() == "sgo literature correlation":
return build_query_sgo_lit_corr(
- sample_ids, temp_table, sample_id_columns, joins)
+ sample_ids, # type: ignore
+ temp_table,
+ sample_id_columns,
+ joins # type: ignore
+ )
if method.lower() in (
"tissue correlation, pearson's r",
"tissue correlation, spearman's rho"):
@@ -580,4 +584,4 @@ def fetch_all_database_data(# pylint: disable=[R0913, R0914]
with conn.cursor() as cursor:
cursor.execute(f"DROP TEMPORARY TABLE {temp_table}")
- return (trait_database[0], trait_database[1])
+ return (trait_database[0], trait_database[1]) # type: ignore