From c11d7605f99a9cb901265dc02729c346338ea709 Mon Sep 17 00:00:00 2001
From: BonfaceKilz
Date: Tue, 21 Jun 2022 10:51:22 +0300
Subject: db: correlations: Ignore types

* gn3/db/correlations.py (__build_query__): Ignore the "sample_ids" and
"joins" types when calling build_query_sgo_lit_corr
(fetch_all_database_data): Ignore the return type.

TODO: Ping Alex/Arun to fix this.
---
 gn3/db/correlations.py | 8 ++++++--
 1 file changed, 6 insertions(+), 2 deletions(-)

diff --git a/gn3/db/correlations.py b/gn3/db/correlations.py
index 07eaa56..ba61bb0 100644
--- a/gn3/db/correlations.py
+++ b/gn3/db/correlations.py
@@ -502,7 +502,11 @@ def __build_query__(
             for item in sample_ids)
         if method.lower() == "sgo literature correlation":
             return build_query_sgo_lit_corr(
-                sample_ids, temp_table, sample_id_columns, joins)
+                sample_ids,  # type: ignore
+                temp_table,
+                sample_id_columns,
+                joins  # type: ignore
+            )
         if method.lower() in (
                 "tissue correlation, pearson's r",
                 "tissue correlation, spearman's rho"):
@@ -580,4 +584,4 @@ def fetch_all_database_data(# pylint: disable=[R0913, R0914]
         with conn.cursor() as cursor:
             cursor.execute(f"DROP TEMPORARY TABLE {temp_table}")
 
-    return (trait_database[0], trait_database[1])
+    return (trait_database[0], trait_database[1])  # type: ignore
-- 
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