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|
{% extends "base.html" %}
{% block css %}
<link rel="stylesheet" type="text/css" href="/static/new/packages/DataTables/css/jquery.dataTables.css" />
<link rel="stylesheet" type="text/css" href="/static/packages/DT_bootstrap/DT_bootstrap.css" />
<link rel="stylesheet" type="text/css" href="/static/packages/TableTools/media/css/TableTools.css" />
<link rel="stylesheet" type="text/css" href="/static/new/packages/DataTables/extensions/buttons.bootstrap.css" />
{% endblock %}
{% block content %}
{{ header("Correlation", 'Trait: {} Dataset: {}'.format(this_trait.name, dataset.name)) }}
<div class="container">
<div class="page-header">
<h1>Correlation Table</h1>
</div>
<p>Values of record {{ this_trait.name }} in the <a href="http://genenetwork.org/webqtl/main.py?FormID=sharinginfo&GN_AccessionId={{ dataset.group.accession_id }}">{{ dataset.fullname }}</a>
dataset were compared to all records in the <a href="http://genenetwork.org/webqtl/main.py?FormID=sharinginfo&GN_AccessionId={{ target_dataset.group.accession_id }}">{{ target_dataset.fullname }}</a>
dataset. The top {{ return_number }} correlations ranked by the {{ formatted_corr_type }} are displayed.
You can resort this list by clicking the headers. Select the Record ID to open the trait data
and analysis page.
</p>
<br />
<button class="btn btn-default" id="select_all"><span class="glyphicon glyphicon-ok"></span> Select All</button>
<button class="btn btn-default" id="deselect_all"><span class="glyphicon glyphicon-remove"></span> Deselect All</button>
<button class="btn btn-default" id="invert"><span class="glyphicon glyphicon-resize-vertical"></span> Invert</button>
<button class="btn btn-default" id="add" disabled><span class="glyphicon glyphicon-plus-sign"></span> Add</button>
<button id="redraw" class="btn btn-default">Reset Columns</button>
<input type="text" id="searchbox" class="form-control" style="width: 200px; display: inline;" placeholder="Search This Table For ...">
<input type="text" id="select_top" class="form-control" style="width: 200px; display: inline;" placeholder="Select Top ...">
<br />
<br />
<div style="width: {% if target_dataset.type == "ProbeSet" %}1600px{% elif target_dataset.type == "Publish" %}1200px{% else %}800px{% endif %}; background-color: #eeeeee; border: 1px solid black;">
<table width="1600px" id="trait_table" class="table table-hover table-striped">
<thead>
<tr>
<th style="width: 30px; background-color: #eeeeee;"></th>
{% for header in target_dataset.header_fields %}
{% if header == 'Year' %}
<th style="text-align: right; background-color: #eeeeee;">{{header}}</th>
{% elif header == 'Max LRS' %}
<th style="text-align: right; background-color: #eeeeee;">Max <br>LRS<a href="http://genenetwork.org//glossary.html#L" target="_blank"><sup style="color:#f00"> ?</sup></a></th>
{% elif header == 'Max LRS Location' %}
<th style="text-align: right; background-color: #eeeeee;">{{header}}</th>
{% elif header == 'Location' %}
<th style="text-align: right; background-color: #eeeeee;">{{header}}</th>
{% elif header == 'Mean' %}
<th style="text-align: right; background-color: #eeeeee;">{{header}}</th>
{% elif header == 'Additive Effect' %}
<th style="text-align: right; background-color: #eeeeee;">Add <br>Effect<a href="http://genenetwork.org//glossary.html#A" target="_blank"><sup style="color:#f00"> ?</sup></a></th>
{% elif header == 'Index' %}
<th style="text-align: right; background-color: #eeeeee; padding-left: 0px; margin-left: 0px;">{{header}}</th>
{% elif header == 'N' %}
<th style="text-align: right; background-color: #eeeeee;">{{header}}</th>
{% else %}
<th style="background-color: #eeeeee;">{{header}}</th>
{% endif %}
{% endfor %}
{% if target_dataset.type == "ProbeSet" %}
{% if corr_method == 'pearson' %}
<th style="text-align: right; background-color: #eeeeee;">Sample r</th>
<th style="text-align: right; background-color: #eeeeee;"> N</th>
<th style="text-align: right; background-color: #eeeeee;">Sample p(r)</th>
<th style="text-align: right; background-color: #eeeeee;">Lit r</th>
<th style="text-align: right; background-color: #eeeeee;">Tissue r</th>
{% else %}
<th style="text-align: right; background-color: #eeeeee;">Sample rho</th>
<th style="text-align: right; background-color: #eeeeee;">N</th>
<th style="text-align: right; background-color: #eeeeee;">Sample p(rho)</th>
<th style="text-align: right; background-color: #eeeeee;">Lit r</th>
<th style="text-align: right; background-color: #eeeeee;">Tissue rho</th>
{% endif %}
{% elif target_dataset.type == "Publish" %}
{% if corr_method == 'pearson' %}
<th style="text-align: right; background-color: #eeeeee;">Sample r</th>
<th style="text-align: right; background-color: #eeeeee;"> N</th>
<th style="text-align: right; background-color: #eeeeee;">Sample p(r)</th>
{% else %}
<th style="text-align: right; background-color: #eeeeee;">Sample rho</th>
<th style="text-align: right; background-color: #eeeeee;"> N</th>
<th style="text-align: right; background-color: #eeeeee;">Sample p(rho)</th>
{% endif %}
{% elif target_dataset.type == "Geno" %}
{% if corr_method == 'pearson' %}
<th style="text-align: right; background-color: #eeeeee;">Sample r</th>
<th style="text-align: right; background-color: #eeeeee;">N</th>
<th style="text-align: right; background-color: #eeeeee;">Sample p(r)</th>
{% else %}
<th style="text-align: right; background-color: #eeeeee;">Sample rho</th>
<th style="text-align: right; background-color: #eeeeee;">N</th>
<th style="text-align: right; background-color: #eeeeee;">Sample p(rho)</th>
{% endif %}
{% endif %}
</tr>
</thead>
<tbody>
{% for trait in correlation_results %}
<tr>
<td> <INPUT TYPE="checkbox" NAME="searchResult" class="checkbox trait_checkbox" style="transform: scale(1.5);" VALUE="{{ data_hmac('{}:{}'.format(trait.name, trait.dataset.name)) }}"></td>
<td align="right">{{ loop.index }}</td>
<td>
<a href="{{ url_for('show_trait_page',
trait_id = trait.name,
dataset = dataset.name
)}}">
{{ trait.name }}
</a>
</td>
{% if target_dataset.type == 'ProbeSet' %}
<td>{{ trait.symbol }}</td>
<td>{{ trait.description_display }}</TD>
<td align="right"style="white-space: nowrap;">{{ trait.location_repr }}</td>
<td align="right">{{ '%0.3f' % trait.mean|float }}</td>
<td align="right" style="padding-right: 15px;">{% if trait.LRS_score_repr != "N/A" %}{{ '%0.1f' % trait.LRS_score_repr|float }}{% else %}N/A{% endif %}</td>
<td align="right" style="padding-right: 15px;">{{ trait.LRS_location_repr }}</td>
<td align="right" style="padding-right: 15px;">{% if trait.additive != "" %}{{ '%0.3f' % trait.additive|float }}{% else %}N/A{% endif %}</td>
<td align="right" style="padding-right: 15px;"><a target="_blank" href="corr_scatter_plot?dataset_1={{dataset.name}}&dataset_2={{trait.dataset.name}}&trait_1={{this_trait.name}}&trait_2={{trait.name}}">{{'%0.3f'|format(trait.sample_r)}}</a></td>
<td align="right" style="padding-right: 15px;">{{ trait.num_overlap }}</td>
<td align="right" style="padding-right: 15px;">{{'%0.3e'|format(trait.sample_p)}}</td>
{% if trait.lit_corr == "" or trait.lit_corr == 0.000 %}
<td align="right" style="padding-right: 15px;">--</td>
{% else %}
<td align="right" style="padding-right: 15px;">{{'%0.3f'|format(trait.lit_corr)}}</td>
{% endif %}
{% if trait.tissue_corr == "" or trait.tissue_corr == 0.000 %}
<td align="right" style="padding-right: 15px;">--</td>
{% else %}
<td align="right" style="padding-right: 15px;">{{'%0.3f'|format(trait.tissue_corr)}}</td>
{% endif %}
{% elif target_dataset.type == "Publish" %}
<td>{{ trait.description_display }}</td>
<td>{{ trait.authors }}</td>
<td>
<a href="{{ trait.pubmed_link }}">
{{ trait.pubmed_text }}
</a>
</td>
<td align="right" style="padding-right: 15px;">{{ trait.LRS_score_repr }}</td>
<td align="right" style="padding-right: 15px;">{{ trait.LRS_location_repr }}</td>
<td align="right" style="padding-right: 15px;">{% if trait.additive != "" %}{{ '%0.3f' % trait.additive|float }}{% else %}N/A{% endif %}</td>
<td align="right" style="padding-right: 15px;"><a target="_blank" href="corr_scatter_plot?dataset_1={{dataset.name}}&dataset_2={{trait.dataset.name}}&trait_1={{this_trait.name}}&trait_2={{trait.name}}">{{'%0.3f'|format(trait.sample_r)}}</a></td>
<td align="right" style="padding-right: 15px;">{{ trait.num_overlap }}</td>
<td align="right" style="padding-right: 15px;">{{'%0.3e'|format(trait.sample_p)}}</td>
{% elif target_dataset.type == "Geno" %}
<td align="right" style="padding-right: 15px;">{{ trait.location_repr }}</TD>
<td align="right" style="padding-right: 15px;"><a target="_blank" href="corr_scatter_plot?dataset_1={{dataset.name}}&dataset_2={{trait.dataset.name}}&trait_1={{this_trait.name}}&trait_2={{trait.name}}">{{'%0.3f'|format(trait.sample_r)}}</a></td>
<td align="right" style="padding-right: 15px;">{{ trait.num_overlap }}</td>
<td align="right" style="padding-right: 15px;">{{'%0.3e'|format(trait.sample_p)}}</td>
{% endif %}
</tr>
{% endfor %}
</tbody>
</table>
</div>
</div>
{% endblock %}
{% block js %}
<script type="text/javascript" src="/static/new/javascript/search_results.js"></script>
<script language="javascript" type="text/javascript" src="/static/new/packages/DataTables/js/jquery.dataTables.js"></script>
<script language="javascript" type="text/javascript" src="https://cdn.datatables.net/buttons/1.0.0/js/dataTables.buttons.min.js"></script>
<script language="javascript" type="text/javascript" src="https://cdn.datatables.net/buttons/1.0.0/js/buttons.html5.min.js"></script>
<script language="javascript" type="text/javascript" src="https://cdn.datatables.net/buttons/1.0.0/js/buttons.bootstrap.min.js"></script>
<script language="javascript" type="text/javascript" src="/static/new/js_external/jszip.min.js"></script>
<script language="javascript" type="text/javascript" src="/static/new/packages/DataTables/js/dataTables.naturalSort.js"></script>
<script language="javascript" type="text/javascript" src="/static/packages/DT_bootstrap/DT_bootstrap.js"></script>
<script language="javascript" type="text/javascript" src="/static/packages/TableTools/media/js/TableTools.min.js"></script>
<script language="javascript" type="text/javascript" src="/static/packages/underscore/underscore-min.js"></script>
<script type="text/javascript" charset="utf-8">
function getValue(x) {
if (x.indexOf('input') >= 0) {
if ($(x).val() == 'x') {
return 0;
}
else {
return parseFloat($(x).val());
}
}
else if (isNaN(x)) {
return x;
}
return parseFloat(x);
}
jQuery.fn.dataTableExt.oSort['numeric-html-asc'] = function(a,b) {
a = Math.abs(parseFloat($(a).text()));
b = Math.abs(parseFloat($(b).text()));
return ((a < b) ? -1 : ((a > b) ? 1 : 0));
};
jQuery.fn.dataTableExt.oSort['numeric-html-desc'] = function(a,b) {
a = Math.abs(parseFloat($(a).text()));
b = Math.abs(parseFloat($(b).text()));
return ((a < b) ? 1 : ((a > b) ? -1 : 0));
};
jQuery.fn.dataTableExt.oSort['cust-txt-asc'] = function (a, b) {
var x = getValue(a);
var y = getValue(b);
if (x == 'N/A' || x == '') {
return 1;
}
else if (y == 'N/A' || y == '') {
return -1;
}
else {
return ((x < y) ? -1 : ((x > y) ? 1 : 0));
}
};
jQuery.fn.dataTableExt.oSort['cust-txt-desc'] = function (a, b) {
var x = getValue(a);
var y = getValue(b);
return ((x < y) ? 1 : ((x > y) ? -1 : 0));
};
jQuery.fn.dataTableExt.oSort['scientific-asc'] = function ( a, b ) {
var x = parseFloat(a);
var y = parseFloat(b);
return ((x < y) ? -1 : ((x > y) ? 1 : 0));
};
jQuery.fn.dataTableExt.oSort['scientific-desc'] = function ( a, b ) {
var x = parseFloat(a);
var y = parseFloat(b);
return ((x < y) ? 1 : ((x > y) ? -1 : 0));
};
$(document).ready( function () {
$('#trait_table tr').click(function(event) {
if (event.target.type !== 'checkbox') {
$(':checkbox', this).trigger('click');
}
});
console.time("Creating table");
{% if target_dataset.type == "ProbeSet" %}
$('#trait_table').dataTable( {
"paging": false,
"buttons": [
{
extend: 'csvHtml5',
text: 'Download CSV',
title: 'correlation_results',
fieldBoundary: '"',
exportOptions: {
columns: [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15]
}
}
],
"columnDefs": [
{ "targets": 0, "orderable": false }
],
"columns": [
{ "type": "natural" },
{ "type": "natural" },
{ "type": "natural" },
{ "type": "natural" },
{ "type": "natural", "width": "20%" },
{ "type": "natural" },
{ "type": "natural" },
{ "type": "natural" },
{ "type": "natural" },
{ "type": "natural" },
{ "type": "natural" },
{ "type": "natural" },
{ "type": "scientific" },
{ "type": "natural" },
{ "type": "natural" }
],
"order": [[12, "asc" ]],
"sDom": "Btir",
"autoWidth": false,
"bDeferRender": true,
"scrollY": "800px",
"scrollCollapse": false
} );
var table = $('#trait_table').DataTable();
new $.fn.dataTable.FixedHeader( table );
{% elif target_dataset.type == "Publish" %}
$('#trait_table').dataTable( {
"paging": false,
"buttons": [
{
extend: 'csvHtml5',
text: 'Download CSV',
title: 'correlation_results',
fieldBoundary: '"',
exportOptions: {
columns: [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11]
}
}
],
"columnDefs": [
{ "targets": 0, "orderable": false }
],
"columns": [
{ "type": "natural" },
{ "type": "natural" },
{ "type": "natural" },
{ "type": "natural", "width": "25%" },
{ "type": "natural", "width": "10%" },
{ "type": "natural" },
{ "type": "natural" },
{ "type": "natural" },
{ "type": "natural" },
{ "type": "numeric-html" },
{ "type": "natural" },
{ "type": "scientific" }
],
"order": [[11, "asc" ]],
"sDom": "Btir",
"autoWidth": false,
"bDeferRender": true,
"scrollY": "800px",
"scrollCollapse": false
} );
{% elif target_dataset.type == "Geno" %}
$('#trait_table').dataTable( {
"paging": false,
"buttons": [
{
extend: 'csvHtml5',
text: 'Download CSV',
title: 'correlation_results',
fieldBoundary: '"',
exportOptions: {
columns: [1, 2, 3, 4, 5, 6]
}
}
],
"columnDefs": [
{ "targets": 0, "orderable": false }
],
"columns": [
{ "type": "natural" },
{ "type": "natural" },
{ "type": "natural" },
{ "type": "natural" },
{ "type": "numeric-html" },
{ "type": "natural" },
{ "type": "scientific" }
],
"order": [[6, "asc" ]],
"sDom": "Btir",
"autoWidth": false,
"bDeferRender": true,
"scrollY": "800px",
"scrollCollapse": false
} );
{% endif %}
console.timeEnd("Creating table");
});
</script>
{% endblock %}
|
