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# Copyright (C) University of Tennessee Health Science Center, Memphis, TN.
#
# This program is free software: you can redistribute it and/or modify it
# under the terms of the GNU Affero General Public License
# as published by the Free Software Foundation, either version 3 of the
# License, or (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
# See the GNU Affero General Public License for more details.
#
# This program is available from Source Forge: at GeneNetwork Project
# (sourceforge.net/projects/genenetwork/).
#
# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010)
# at rwilliams@uthsc.edu and xzhou15@uthsc.edu
#
#
#
# This module is used by GeneNetwork project (www.genenetwork.org)
#
# Created by GeneNetwork Core Team 2010/08/10
#
# Last updated by GeneNetwork Core Team 2010/10/20
# The columns that are to be displayed are chosen at the line about 1000, with categories["info"]; this initializes the columns and assigns a 'variable_name' :and: "Display Name"
columnNames = {
# The following are for ALL VARIANTS
'variant':"Variant Type",
'snpname':"SNP ID", # SnpAll.Id
'chromosome':"Chromosome",
'mb':"Mb",
'sourceName':"Source",
'sourceCreated':"Source Created",
'sourceAdded':"Source Added",
'sourceId':"Source",
'gene':'Gene',
# The following are for SNP VARIANTS
'source':'Source',
'chr':'Chr',
'snpId':"Submitter ID", #SnpAll.SnpName
'mbCelera':"Mb (CDS)",
'rs':"ID",
'function':"Function",
'type':"Type",
'majorCount':"Major Count",
'minorCount':"Minor Count",
'missingCount':"Missing Count",
'class':"Class",
'flanking5':"Flanking 5'",
'flanking3':"Flanking 3'",
'blatScore':"BLAT Score",
'majorAllele':"Major Allele",
'minorAllele':"Minor Allele",
'shortAlleles':'Reference',
"Proximal_Gap_bp":"Gap",
'domain':'Domain',
'ncbi':'NCBI Annotation',
'conservation':'ConScore',
# The following are for INDEL VARIANTS
'indelId':"ID", # Indel.Id Indel
'indelName':"ID", # Indel.Name
'indelType':"Type", # Indel.Type
'indelChr':"InDel Chr", # Indel.Chromosome
'indelMb_s':"Mb Start", # Indel.Mb_start
'indelMb_e':"Mb End", # IndelAll.Mb_end
'indelStrand':"Strand", # IndelAll.Strand
'indelSize':"Size", # IndelAll.Size
'indelSeq':"Sequence", # IndelAll.Sequence
}
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