web/tutorial/ppt/html/webqtl_demo2.ppt_files/slide0048.htm


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<title>PowerPoint Presentation  -  Complex trait analysis, develop-ment, and
genomics</title>
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<div style='mso-special-format:nobullet;text-align:left;font-family:"Gill Sans";
font-weight:normal;font-style:normal;text-decoration:none;text-shadow:none;
text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;color:#FBFDB8;
font-size:213%;mso-text-raise:0%;mso-line-spacing:"-220 0 -216";mso-margin-left-alt:
292;mso-text-indent-alt:0;mso-line-spacing:"-220 0 -216";mso-margin-left-alt:
292;mso-text-indent-alt:0'><span style='mso-special-format:nobullet;display:
none;color:#FBFDB8;font-family:"Monotype Sorts";font-size:99%'>l</span><span
style='font-size:106%;color:#E9EB5D;mso-color-index:3'>Summary of Part 1:</span><span
style='font-size:94%;color:#E9EB5D;mso-color-index:3;mso-special-format:lastCR;
display:none'><br>
</span></div>

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<div style='mso-special-format:numbullet;font-family:Arial;text-align:left;
font-family:Verdana;font-weight:normal;font-style:normal;text-decoration:none;
text-shadow:none;text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;
color:black;mso-color-index:1;font-size:80%;mso-text-raise:0%;mso-margin-left-alt:
144;mso-margin-left-alt:144'><script>
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style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:numbullet;
position:absolute;left:-2.84%;font-family:Arial'>1.</span></span><span
style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
3'><span style="mso-spacerun: yes">&nbsp;</span>You have learned the basics
about searching for traits<br>
</span></span></layer></div>

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font-family:Verdana;font-weight:normal;font-style:normal;text-decoration:none;
text-shadow:none;text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;
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color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:numbullet;
position:absolute;left:-3.03%;font-family:Arial'>2.</span></span><span
style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
3'><span style="mso-spacerun: yes">&nbsp;</span>You know some methods to check
data quality<br>
</span></span></layer></div>

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style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:numbullet;
position:absolute;left:-3.03%;font-family:Arial'>3.</span></span><span
style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
3'><span style="mso-spacerun: yes">&nbsp;</span>You know how to edit bad or
suspicious data<br>
</span></span></layer></div>

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font-family:Verdana;font-weight:normal;font-style:normal;text-decoration:none;
text-shadow:none;text-effect:none;mso-fareast-hint:no;layout-flow:horizontal;
color:black;mso-color-index:1;font-size:80%;mso-text-raise:0%;mso-margin-left-alt:
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style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:numbullet;
position:absolute;left:-2.85%;font-family:Arial'>4.</span></span><span
style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
3'><span style="mso-spacerun: yes">&nbsp;</span>You know how to review the
basic statistics of a trait<br>
</span></span></layer></div>

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style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:numbullet;
position:absolute;left:-2.74%;font-family:Arial'>5.</span></span><span
style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
3'><span style="mso-spacerun: yes">&nbsp;</span>You know how to generate a
scattergram between two </span></span></layer><script>
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</script><span
style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
color:#E9EB5D;mso-color-index:3'>traits using the Traits Correlation tool<br>
</span></span></layer></div>

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style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:numbullet;
position:absolute;left:-2.56%;font-family:Arial'>6.</span></span><span
style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
3'><span style="mso-spacerun: yes">&nbsp;</span>You know how to add items to
your SELECTIONS window<br>
</span></span></layer></div>

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style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
color:#E9EB5D;mso-color-index:3'><span style='mso-special-format:numbullet;
position:absolute;left:-2.57%;font-family:Arial'>7.</span></span><span
style='font-family:"Gill Sans";font-size:200%;color:#E9EB5D;mso-color-index:
3'><span style="mso-spacerun: yes">&nbsp;</span>You know how to generate a
Network Graph of traits that </span></span></layer><script>
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</script><span
style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
color:#E9EB5D;mso-color-index:3'>co-vary. </span></span></layer></div>

</layer></div>

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<div style='text-align:left;font-family:Verdana;font-weight:normal;font-style:
normal;text-decoration:none;text-shadow:none;text-effect:none;mso-fareast-hint:
no;layout-flow:horizontal;color:black;mso-color-index:1;font-size:80%;
mso-text-raise:0%'><script>
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</script><span
style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
color:#E9EB5D;mso-color-index:3'>What does genetic covariance mean? The genetic
covariance can </span></span></layer><script>
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</script><span
style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
color:#E9EB5D;mso-color-index:3'>be functional and mechanistic, but it can also
be due to linkage </span></span></layer><script>
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</script><span
style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
color:#E9EB5D;mso-color-index:3'>disequilibrium. Finally, it can be due to
sampling error or poor </span></span></layer><script>
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</script><span
style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
color:#E9EB5D;mso-color-index:3'>experimental design. Evaluate the biological
plausibility of </span></span></layer><script>
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</script><span
style='text-align:left'><span style='font-family:"Gill Sans";font-size:200%;
color:#E9EB5D;mso-color-index:3'>correlations. Test and be skeptical.</span></span></layer></div>

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