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|
#this is MDP pseudo genotype file, it should be tab-delimited
#the first three/four columns should be "Chr, Locus, cM, [Mb]" (case sensitive)
#please save as Unix format text file.
#comment line always start with a '#'
#type riset or intercross
@type:intercross
@name:MDP
#abbreviation of maternal or paternal parents
@mat:-1
@pat:1
#heterozygous , optional, default is "H"
@het:0
#Unknown , optional, default is "U"
@unk:0
Chr Locus cM Mb 129P1/ReJ 129P3/J 129PFVBF1-TgN(MMTV) 129S1/SvImJ 129S4/SvJae 129S6/SvEv 129S6/SvEvTac 129T2/SvEmsJ 129X1/SvJ A/HeJ A/J A/WySnJ AFVBF1-TgN(MMTV) AKFVBF1-TgN(MMTV) AKR/J ALR/LtJ ALS/LtJ B10FVBF1-TgN(MMTV) B6.Cg-A<y>/J B6.Cg-Tub<tub>/J B6.Cg-m +/+ Lepr<db>/J B6.V-Lep<ob>/J B6129XF1 B6CBAF1/J B6IcrFVBF1-TgN(MMTV) BALB/cByJ BALB/cJ BDP/J BFM/2Ms BKS.Cg-m +/+ Lepr<db>/J BKS.HRS-Cpe<fat>/J BLG2/Ms BPH/2J BPL/1J BPN/3J BRFVBF1-TgN(MMTV) BTBRT<+>tf/J BUB/BnJ BUFVBF1-TgN(MMTV) BXSB/MpJ C3H/HeJ C3H/HeOuJ C3H/HeSnJ C3HeB/FeJ C3IcrFVBF1-TgN(MMTV) C57BL/10J C57BL/10ScSn C57BL/10SnJ C57BL/6ByJ C57BL/6J C57BLKS/J C57BR/cdJ C57L/J C58/J C58FVBF1-TgN(MMTV) CAF1/J CAFVBF1-TgN(MMTV) CaJFVBF1-TgN(MMTV) CALB/RkJ CASA/RkJ CAST/EiJ CB6F1/J CBA/CaJ CBA/J CE/J CEFVBF1-TgN(MMTV) CIM Clcn3<KO> CIcrFVBF1-TgN(MMTV) CTP CZECHI/EiJ CZECHII/EiJ D1FVBF1-TgN(MMTV) D2FVBF1-TgN(MMTV) DBA/1J DBA/1LacJ DBA/2HaSmnJ DBA/2J DDK/Pas FVB-Tg(MMTV) FVB/NJ Gabbr1<KO> Garba1<KO> Gnb5<KO> Gpr19<KO> HMI/Ms I/LnJ IDH2/Ei IFVBF1-TgN(MMTV) ILS ILS/Bg IS/CamRkJ ISS ISS/Bg JF1/Ms KJR/Ms KK/HlJ KKFVBF1-TgN(MMTV) LEWES/EiJ LG/J LP/J LPFVBF1-TgN(MMTV) MA/MyJ MAI MAI/Pas MBT MOFVBF1-TgN(MMTV) MOLC/RkJ MOLD/RkJ MOLF/EiJ MRL/MpJ MRL/MpJ-Fas<lpr>/J MSM/Ms MusSpretusOutbred1 MusSpretusOutbred2 NJL/Ms NOD.NON-H2<nb1>/LtJ NOD/ShiLtJ NOFVBF1-TgN(MMTV) NON/LtJ NOR/LtJ NZB/BlNJ NZBFVBF1-TgN(MMTV) NZO/HlLtJ NZW/LacJ NZWFVBF1-TgN(MMTV) Nyx<nob> O20 P/J PANCEVO/EiJ PERA/EiJ PERC/EiJ PFVBF1-TgN(MMTV) PL/J PWD/PhJ PWK/Pas PWK/PhJ PWK/Rbrc PWK/Ros Qsi5 RBA/DnJ RBF/DnJ RF/J RFFVBF1-TgN(MMTV) RIIIS/J Rpe65<rd12> SB/LeJ SEA/GnJ SEC/1ReJ SEFVBF1-TgN(MMTV) SEG/Pas SENCARA/PtJ SENCARB/PtJ SENCARC/PtJ SF/CamEiJ SJL/Bm SJL/J SKH2/J SKIVE/EiJ SM/J SPRET/EiJ ST/bJ STFVBF1-TgN(MMTV) SWFVBF1-TgN(MMTV) SWN/Ms SWR/J SWXL4/TyJ TIRANO/EiJ WMP/PasDnJ WSB/EiJ YBR/EiJ ZALENDE/EiJ B6D2F1 B6AF1/J B6C3F1/J B6SJLF1/J
1 rs3683945 6 3.18748 0 0 0 1 0 0 0 0 1 0 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 1 1 1 0 1 1 0 1 -1 0 0 -1 0 1 1 0 0 1 0 1 1 1 0 0 0 0 -1 -1 -1 0 -1 -1 1 0 -1 0 0 -1 -1 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 1 0 0 1 0 -1 1 0 0 1 0 1 -1 1 0 0 -1 0 -1 0 -1 -1 1 0 0 -1 -1 -1 0 0 1 0 1 1 1 0 1 1 0 0 0 1 -1 -1 -1 0 1 0 -1 -1 -1 -1 0 1 1 -1 0 1 0 1 1 1 0 0 1 0 0 -1 0 1 0 -1 0 -1 1 0 0 0 1 0 1 1 -1 1 1 0 0 0 0
1 rs3707673 6 3.397472 0 0 0 -1 0 0 0 0 -1 0 -1 0 0 0 -1 -1 -1 0 0 0 0 0 0 0 0 -1 -1 -1 0 0 0 0 -1 -1 -1 0 -1 -1 0 -1 1 0 0 1 0 -1 -1 0 0 -1 0 -1 -1 -1 0 0 0 0 -1 -1 -1 0 1 1 -1 0 -1 0 0 -1 -1 0 0 0 -1 0 0 -1 0 0 -1 0 0 0 0 0 -1 0 0 -1 0 -1 -1 0 0 -1 0 -1 1 -1 0 0 -1 0 -1 0 -1 -1 -1 0 0 -1 -1 -1 0 0 -1 0 -1 -1 -1 0 -1 -1 0 0 0 -1 -1 -1 -1 0 -1 0 -1 -1 -1 -1 0 -1 -1 1 0 -1 0 -1 -1 -1 0 0 -1 0 0 1 0 -1 0 -1 0 -1 -1 0 0 0 -1 0 -1 -1 -1 -1 -1 0 0 0 0
1 rs6269442 6 3.482275 0 0 0 -1 0 0 0 0 -1 0 1 0 0 0 -1 -1 -1 0 0 0 0 0 0 0 0 1 1 -1 0 0 0 0 -1 -1 -1 0 -1 -1 0 1 -1 0 0 -1 0 1 1 0 0 1 0 -1 -1 1 0 0 0 0 -1 -1 -1 0 -1 -1 1 0 -1 0 0 -1 -1 0 0 0 -1 0 0 -1 0 0 -1 0 0 0 0 0 -1 0 0 1 0 -1 -1 0 0 1 0 1 -1 -1 0 0 -1 0 -1 0 -1 -1 1 0 0 -1 -1 -1 0 0 -1 0 -1 -1 1 0 1 1 0 0 0 -1 -1 -1 -1 0 -1 0 -1 -1 -1 -1 0 1 -1 -1 0 1 0 -1 1 1 0 0 -1 0 0 -1 0 -1 0 -1 0 -1 -1 0 0 0 -1 0 -1 -1 -1 -1 -1 0 0 0 0
1 rs6336442 6 3.570714 0 0 0 1 0 0 0 0 1 0 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 1 1 1 0 1 1 0 1 -1 0 0 -1 0 1 1 0 0 1 0 1 1 1 0 0 0 0 -1 -1 -1 0 -1 -1 1 0 -1 0 0 -1 -1 0 0 0 -1 0 0 -1 0 0 1 0 0 0 0 0 1 0 0 1 0 -1 -1 0 0 1 0 -1 -1 1 0 0 -1 0 -1 0 -1 -1 1 0 0 -1 -1 -1 0 0 1 0 1 1 1 0 1 1 0 0 0 1 -1 -1 -1 0 1 0 -1 -1 -1 -1 0 1 -1 -1 0 1 0 1 1 1 0 0 1 0 0 -1 0 1 0 -1 0 -1 1 0 0 0 1 0 -1 -1 1 1 -1 0 0 0 0
1 rs6243160 6.750616181 4.153606 0 0 0 1 0 0 0 0 1 0 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 1 1 1 0 1 1 0 1 1 0 0 1 0 1 1 0 0 1 0 1 1 1 0 0 0 0 1 -1 -1 0 1 1 1 0 -1 0 0 -1 -1 0 0 0 -1 0 0 -1 0 0 1 0 0 0 0 0 1 0 0 1 0 1 -1 0 0 1 0 1 1 1 0 0 -1 0 -1 0 -1 -1 1 0 0 -1 1 1 0 0 1 0 1 1 1 0 1 1 0 0 0 1 1 1 -1 0 1 0 -1 -1 -1 -1 0 1 1 1 0 1 0 1 1 1 0 0 1 0 0 1 0 1 0 -1 0 1 1 0 0 0 1 0 1 1 1 1 1 0 0 0 0
1 rs13475701 6.596947469 4.516168 0 0 0 1 0 0 0 0 1 0 -1 0 0 0 1 -1 -1 0 0 0 0 0 0 0 0 -1 -1 -1 0 0 0 0 -1 -1 1 0 1 -1 0 1 -1 0 0 -1 0 1 1 0 0 1 0 -1 -1 1 0 0 0 0 -1 -1 -1 0 -1 -1 -1 0 -1 0 0 -1 -1 0 0 0 -1 0 0 -1 0 0 -1 0 0 0 0 0 -1 0 0 -1 0 -1 -1 0 0 1 0 -1 -1 1 0 0 -1 0 -1 0 -1 -1 1 0 0 -1 -1 -1 0 0 -1 0 -1 -1 -1 0 -1 -1 0 0 0 -1 -1 -1 -1 0 1 0 -1 -1 -1 -1 0 1 -1 -1 0 -1 0 1 -1 -1 0 0 -1 0 0 -1 0 -1 0 -1 0 -1 -1 0 0 0 -1 0 -1 -1 -1 -1 -1 0 0 0 0
1 rs6198069 6.613075571 4.712022 0 0 0 -1 0 0 0 0 -1 0 1 0 0 0 -1 -1 -1 0 0 0 0 0 0 0 0 1 1 -1 0 0 0 0 -1 -1 -1 0 -1 -1 0 -1 -1 0 0 -1 0 -1 -1 0 0 -1 0 -1 -1 -1 0 0 0 0 -1 -1 -1 0 -1 -1 -1 0 -1 0 0 -1 1 0 0 0 -1 0 0 -1 0 0 -1 0 0 0 0 0 -1 0 0 1 0 -1 -1 0 0 -1 0 -1 -1 -1 0 0 1 0 1 0 1 1 -1 0 0 1 0 0 0 0 -1 0 -1 -1 -1 0 -1 -1 0 0 0 -1 1 -1 -1 0 -1 0 1 1 1 1 0 -1 -1 -1 0 -1 0 -1 1 1 0 0 -1 0 0 -1 0 -1 0 1 0 -1 -1 0 0 0 -1 0 -1 -1 -1 -1 -1 0 0 0 0
1 rs3659303 6.616315583 4.757965 0 0 0 1 0 0 0 0 1 0 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 1 1 1 0 1 1 0 1 -1 0 0 -1 0 1 1 0 0 1 0 1 1 1 0 0 0 0 -1 -1 -1 0 -1 -1 1 0 1 0 0 1 -1 0 0 0 -1 0 0 -1 0 0 1 0 0 0 0 0 1 0 0 1 0 -1 1 0 0 1 0 -1 -1 1 0 0 -1 0 -1 0 -1 -1 1 0 0 -1 1 1 0 0 1 0 1 1 1 0 1 1 0 0 0 1 1 -1 -1 0 1 0 -1 -1 -1 -1 0 1 -1 -1 0 1 0 1 1 1 0 0 1 0 0 -1 0 1 0 -1 0 1 1 0 0 0 1 0 -1 -1 -1 1 -1 0 0 0 0
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3 rs13476994 4.6 17.164545 0 0 0 1 0 0 0 0 1 0 -1 0 0 0 -1 -1 -1 0 0 0 0 0 0 0 0 -1 -1 -1 0 0 0 0 -1 -1 -1 0 1 -1 0 -1 -1 0 0 -1 0 -1 -1 0 0 -1 0 -1 -1 -1 0 0 0 0 -1 1 1 0 -1 -1 -1 0 1 0 0 1 1 0 0 0 -1 0 0 1 0 0 -1 0 0 0 0 0 -1 0 0 -1 0 -1 -1 0 0 -1 0 1 -1 1 0 0 1 0 1 0 1 1 1 0 0 1 1 1 0 0 -1 0 -1 -1 -1 0 -1 -1 0 0 0 -1 1 -1 -1 0 -1 0 1 1 1 1 0 -1 0 -1 0 -1 0 -1 -1 -1 0 0 -1 0 0 0 0 -1 0 1 0 0 -1 0 0 0 -1 0 0 0 -1 0 0 0 0 0 0
3 mCV22614242 4.637090434 17.534547 0 0 0 -1 0 0 0 0 -1 0 -1 0 0 0 1 1 -1 0 0 0 0 0 0 0 0 -1 -1 1 0 0 0 0 1 -1 -1 0 -1 -1 0 1 -1 0 0 -1 0 1 1 0 0 1 0 1 1 -1 0 0 0 0 -1 -1 -1 0 1 -1 -1 0 -1 0 0 -1 -1 0 0 0 1 0 0 -1 0 0 -1 0 0 0 0 0 1 0 0 -1 0 -1 -1 0 0 1 0 -1 1 -1 0 0 -1 0 -1 0 -1 -1 -1 0 0 -1 -1 -1 0 0 1 0 1 1 1 0 1 1 0 0 0 1 0 1 -1 0 1 0 -1 -1 -1 -1 0 1 -1 1 0 -1 0 -1 1 -1 0 0 1 0 0 -1 0 -1 0 -1 0 -1 -1 0 0 0 -1 0 -1 -1 -1 -1 -1 0 0 0 0
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3 mCV24211562 5.541916328 19.163311 0 0 0 1 0 0 0 0 1 0 1 0 0 0 1 -1 -1 0 0 0 0 0 0 0 0 -1 -1 1 0 0 0 0 1 1 -1 0 1 1 0 1 1 0 0 1 0 1 1 0 0 1 0 -1 -1 -1 0 0 0 0 1 1 -1 0 1 1 1 0 -1 0 0 0 0 0 0 0 1 0 0 -1 0 0 1 0 0 0 0 0 1 0 0 -1 0 1 1 0 0 1 0 -1 -1 1 0 0 0 0 0 0 0 0 0 0 0 0 -1 -1 0 0 -1 0 -1 -1 -1 0 -1 -1 0 0 0 1 0 1 -1 0 -1 0 0 0 0 0 0 1 -1 1 0 1 0 1 1 -1 0 0 -1 0 0 -1 0 1 0 0 0 -1 1 0 0 0 1 0 -1 1 -1 -1 -1 0 0 0 0
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