path: root/web/genotypes/MDP.geno.update

#this is MDP pseudo genotype file, it should be tab-delimited"																																																																																																																												
#the first three/four columns should be "Chr, Locus, cM, [Mb]" (case sensitive)																																																																																																																													
#please save as Unix format text file.																																																																																																																													
#comment line always start with a '#'																																																																																																																													
#type riset or intercross																																																																																																																													
@type:intercross																																																																																																																													
@name:MDP																																																																																																																													
#abbreviation of maternal or paternal parents																																																																																																																													
@mat:-1																																																																																																																													
@pat:1																																																																																																																													
#heterozygous , optional, default is "H"																																																																																																																												
@het:0																																																																																																																													
#Unknown , optional, default is "U"																																																																																																																													
@unk:0																																																																																																																													
Chr	Locus	cM	Mb	129P1/ReJ	129P3/J	129S1/SvImJ	129S4/SvJae	129S6/SvEv	129S6/SvEvTac	129T2/SvEmsJ	129X1/SvJ	A/HeJ	A/J	A/WySnJ	AKR/J	ALR/LtJ	ALS/LtJ	B6.Cg-A<y>/J	B6.Cg-Tub<tub>/J	B6.Cg-m +/+ Lepr<db>/J	B6.V-Lep<ob>/J	BALB/cByJ	BALB/cJ	BDP/J	BFM/2Ms	BKS.Cg-m +/+ Lepr<db>/J	BKS.HRS-Cpe<fat>/J	BLG2/Ms	BPH/2J	BPL/1J	BPN/3J	BTBR T+ tf/J	BUB/BnJ	BXSB/MpJ	C3H/HeJ	C3H/HeOuJ	C3H/HeSnJ	C3HeB/FeJ	C57BL/10J	C57BL/10SnJ	C57Bl/6ByJ	C57BL/6J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAF1/J	CALB/RkJ	CAST/EiJ	CASA/RkJ	CB6F1/J	CBA/CaJ	CBA/J	CE/J	CZECHI/EiJ	DBA/1J	DBA/1LacJ	DBA/2HaSmnJ	DBA/2J	DDK/Pas	FVB/NJ	HMI/Ms	I/LnJ	IDH2/Ei	ILS/Bg	ISS/Bg	IS/CamRkJ	JF1/Ms	KJR/Ms	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLC/RkJ	MOLD/RkJ	MOLF/EiJ	MRL/MpJ	MSM/Ms	MusPaha	NJL/Ms	NOD.NON-H2<nb1>/LtJ	NOD/LtJ	NON/LtJ	NOR/LtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	O20	P/J	PANCEVO/EiJ	PERA/EiJ	PERC/EiJ	PL/J	PWD/PhJ	PWK/PhJ	Qsi5	RBA/DnJ	RBF/DnJ	RF/J	RIIIS/J	SB/LeJ	SEA/GnJ	SEC/1ReJ	SEG/Pas	SENCARA/PtJ	SENCARB/PtJ	SENCARC/PtJ	SF/CamEiJ	SJL/Bm	SJL/J	SKH2/J	SKIVE/EiJ	SM/J	SPRET/EiJ	ST/bJ	SWN/Ms	SWR/J	SWXL4/TyJ	TIRANO/EiJ	WMP/PasDnJ	WSB/EiJ	YBR/Ei	ZALENDE/EiJ
1	rs3683945	0	3.18748	0	0	1	0	0	0	0	1	0	-1	0	1	1	1	0	0	0	0	-1	-1	1	0	0	0	0	1	1	1	1	1	-1	1	0	0	1	-1	0	0	-1	0	1	1	-1	0	1	1	1	0	1	1	-1	1	1	0	0	1	0	1	0	1	0	-1	1	1	0	0	-1	-1	1	1	0	0	1	1	-1	0	1	0	0	0	1	1	1	-1	-1	-1	0	1	1	1	1	1	0	1	0	-1	1	1	-1	1	-1	-1	0	1	0	0	1	0	1	0	1	0	1	1	0	1	0	1	1	1	1	1
1	rs3707673	0	3.397472	0	0	-1	0	0	0	0	-1	0	-1	0	-1	-1	-1	0	0	0	0	-1	-1	-1	0	0	0	0	-1	-1	-1	-1	-1	-1	1	0	0	1	-1	0	0	-1	0	-1	-1	-1	0	1	1	1	0	1	1	-1	1	1	0	0	1	0	-1	0	-1	0	-1	1	1	0	0	-1	1	1	-1	0	0	1	1	-1	0	1	0	0	0	-1	-1	-1	-1	-1	-1	0	-1	1	1	1	-1	0	1	0	-1	1	1	-1	-1	-1	-1	0	-1	0	0	1	0	-1	0	1	0	1	-1	0	-1	0	1	1	-1	-1	1
1	rs6269442	0	3.482275	0	0	-1	0	0	0	0	-1	0	-1	0	-1	-1	-1	0	0	0	0	-1	-1	-1	0	0	0	0	-1	-1	-1	-1	-1	-1	-1	0	0	-1	-1	0	0	-1	0	-1	-1	-1	0	1	-1	-1	0	-1	-1	-1	-1	1	0	0	1	0	-1	0	-1	0	-1	1	1	0	0	-1	-1	-1	-1	0	0	-1	-1	-1	0	-1	0	0	0	-1	-1	-1	-1	-1	-1	0	-1	1	1	1	-1	0	-1	0	-1	-1	-1	-1	-1	-1	-1	0	-1	0	0	-1	0	-1	0	-1	0	-1	-1	0	-1	0	-1	-1	-1	-1	-1
1	rs6336442	0	3.570714	0	0	1	0	0	0	0	1	0	-1	0	1	1	1	0	0	0	0	-1	-1	1	0	0	0	0	1	1	1	1	1	-1	-1	0	0	-1	-1	0	0	-1	0	1	1	-1	0	-1	-1	-1	0	-1	-1	-1	-1	-1	0	0	-1	0	1	0	1	0	-1	-1	-1	0	0	-1	-1	-1	1	0	0	-1	-1	-1	0	-1	0	0	0	1	1	1	-1	-1	-1	0	1	1	-1	-1	1	0	-1	0	-1	-1	-1	-1	1	-1	-1	0	1	0	0	-1	0	1	0	-1	0	-1	1	0	1	0	-1	-1	-1	1	-1
1	rs13475699	0	3.850486	0	0	-1	0	0	0	0	-1	0	-1	0	-1	-1	-1	0	0	0	0	-1	-1	-1	0	0	0	0	-1	-1	-1	-1	-1	-1	1	0	0	1	-1	0	0	-1	0	-1	-1	-1	0	1	-1	-1	0	1	1	-1	-1	-1	0	0	-1	0	-1	0	-1	0	-1	-1	1	0	0	-1	-1	1	-1	0	0	-1	-1	-1	0	-1	0	0	0	-1	-1	-1	-1	-1	-1	0	-1	0	1	-1	-1	0	-1	0	-1	1	1	-1	-1	-1	-1	0	-1	0	0	1	0	-1	0	-1	0	1	-1	0	-1	0	1	1	-1	-1	1
1	rs13475700	0	4.088481	0	0	-1	0	0	0	0	-1	0	-1	0	-1	-1	-1	0	0	0	0	-1	-1	-1	0	0	0	0	-1	-1	-1	-1	-1	-1	-1	0	0	-1	-1	0	0	-1	0	-1	-1	-1	0	-1	1	1	0	-1	-1	-1	1	1	0	0	1	0	-1	0	-1	0	-1	1	-1	0	0	-1	-1	-1	-1	0	0	1	1	-1	0	1	0	0	0	-1	-1	-1	-1	-1	-1	0	-1	0	-1	1	-1	0	1	0	-1	-1	-1	-1	-1	-1	-1	0	-1	0	0	-1	0	-1	0	1	0	-1	-1	0	-1	0	-1	-1	-1	-1	-1
1	rs3658242	0	4.133258	0	0	-1	0	0	0	0	-1	0	1	0	-1	1	1	0	0	0	0	1	1	1	0	0	0	0	1	1	-1	-1	1	-1	1	0	0	1	-1	0	0	-1	0	1	1	-1	0	1	1	1	0	1	1	1	1	1	0	0	1	0	1	0	1	0	1	1	1	0	0	-1	1	1	-1	0	0	1	1	-1	0	1	0	0	0	1	1	1	1	1	1	0	1	1	1	1	-1	0	1	0	-1	1	1	1	-1	1	1	0	1	0	0	1	0	1	0	1	0	1	1	0	1	0	1	1	1	1	1
1	rs6243160	0	4.153606	0	0	-1	0	0	0	0	-1	0	1	0	-1	-1	-1	0	0	0	0	1	1	-1	0	0	0	0	-1	-1	-1	-1	-1	-1	-1	0	0	-1	-1	0	0	-1	0	-1	-1	-1	0	-1	-1	-1	0	-1	-1	-1	1	-1	0	0	-1	0	-1	0	-1	0	1	-1	-1	0	0	-1	-1	-1	-1	0	0	1	1	-1	0	1	0	0	0	-1	-1	-1	-1	-1	-1	0	-1	1	-1	-1	-1	0	1	0	-1	-1	-1	-1	-1	1	1	0	-1	0	0	-1	0	-1	0	1	0	-1	-1	0	-1	0	-1	-1	-1	-1	-1
1	rs13475701	0	4.516168	0	0	-1	0	0	0	0	-1	0	-1	0	-1	-1	-1	0	0	0	0	-1	-1	-1	0	0	0	0	-1	-1	-1	-1	-1	-1	1	0	0	1	-1	0	0	-1	0	-1	-1	-1	0	1	1	1	0	1	1	-1	1	1	0	0	1	0	-1	0	-1	0	-1	-1	1	0	0	-1	1	1	-1	0	0	1	1	-1	0	1	0	0	0	-1	-1	-1	-1	-1	-1	0	-1	-1	1	1	-1	0	1	0	-1	1	1	-1	-1	-1	-1	0	-1	0	0	1	0	-1	0	1	0	-1	-1	0	-1	0	1	1	1	-1	1
1	rs6198069	0	4.712022	0	0	-1	0	0	0	0	-1	0	-1	0	-1	-1	-1	0	0	0	0	-1	-1	-1	0	0	0	0	-1	-1	-1	-1	-1	-1	-1	0	0	-1	-1	0	0	-1	0	-1	-1	-1	0	-1	-1	-1	0	-1	-1	-1	1	1	0	0	1	0	-1	0	-1	0	-1	-1	-1	0	0	-1	-1	-1	-1	0	0	1	1	-1	0	1	0	0	0	-1	-1	-1	-1	-1	-1	0	-1	1	-1	-1	-1	0	1	0	-1	-1	-1	-1	-1	-1	-1	0	-1	0	0	-1	0	-1	0	1	0	1	-1	0	-1	0	-1	-1	-1	-1	-1
1	rs3659303	0	4.757965	0	0	-1	0	0	0	0	-1	0	-1	0	-1	-1	-1	0	0	0	0	-1	-1	-1	0	0	0	0	-1	-1	-1	-1	-1	-1	-1	0	0	-1	-1	0	0	-1	0	-1	-1	-1	0	-1	-1	-1	0	-1	-1	-1	-1	1	0	0	1	0	-1	0	-1	0	-1	-1	-1	0	0	-1	-1	-1	-1	0	0	-1	-1	-1	0	-1	0	0	0	-1	-1	-1	-1	-1	-1	0	-1	-1	-1	-1	-1	0	-1	0	-1	-1	-1	-1	-1	-1	-1	0	-1	0	0	-1	0	-1	0	-1	0	1	-1	0	-1	0	-1	-1	-1	-1	-1
1	rs4230167	0	4.762022	0	0	-1	0	0	0	0	-1	0	-1	0	-1	-1	-1	0	0	0	0	-1	-1	-1	0	0	0	0	-1	-1	-1	-1	-1	-1	-1	0	0	-1	-1	0	0	-1	0	-1	-1	-1	0	-1	-1	-1	0	-1	-1	-1	1	1	0	0	1	0	-1	0	-1	0	-1	-1	-1	0	0	-1	-1	-1	-1	0	0	1	1	-1	0	1	0	0	0	-1	-1	-1	-1	-1	-1	0	-1	0	-1	1	-1	0	1	0	-1	-1	-1	-1	-1	-1	-1	0	-1	0	0	-1	0	-1	0	1	0	-1	-1	0	-1	0	-1	-1	-1	-1	-1
1	rs4222142	0	4.770435	0	0	-1	0	0	0	0	-1	0	-1	0	-1	-1	-1	0	0	0	0	-1	-1	-1	0	0	0	0	-1	-1	-1	-1	-1	-1	1	0	0	1	-1	0	0	-1	0	-1	-1	-1	0	-1	-1	-1	0	1	1	-1	-1	-1	0	0	-1	0	-1	0	-1	0	-1	-1	-1	0	0	-1	-1	1	-1	0	0	-1	-1	-1	0	-1	0	0	0	-1	-1	-1	-1	-1	-1	0	-1	-1	-1	-1	-1	0	-1	0	-1	-1	1	-1	-1	-1	-1	0	-1	0	0	1	0	-1	0	-1	0	0	-1	0	-1	0	-1	-1	-1	-1	-1
1	rs6365999	0	4.811062	0	0	-1	0	0	0	0	-1	0	-1	0	-1	-1	-1	0	0	0	0	-1	-1	-1	0	0	0	0	-1	-1	-1	-1	-1	-1	-1	0	0	-1	-1	0	0	-1	0	-1	-1	-1	0	-1	-1	-1	0	-1	-1	-1	1	1	0	0	1	0	-1	0	-1	0	-1	-1	-1	0	0	-1	-1	-1	-1	0	0	1	1	-1	0	1	0	0	0	-1	-1	-1	-1	-1	-1	0	-1	-1	-1	1	-1	0	1	0	-1	-1	-1	-1	-1	-1	-1	0	-1	0	0	-1	0	-1	0	1	0	-1	-1	0	-1	0	-1	-1	-1	-1	-1
1	rs3674785	0	4.851652	0	0	1	0	0	0	0	1	0	1	0	1	-1	-1	0	0	0	0	1	1	-1	0	0	0	0	-1	-1	1	1	-1	-1	1	0	0	1	-1	0	0	-1	0	-1	-1	-1	0	-1	-1	-1	0	1	1	1	-1	-1	0	0	-1	0	1	0	-1	0	1	1	-1	0	0	1	1	1	1	0	0	-1	-1	1	0	-1	0	0	0	-1	-1	-1	1	1	1	0	-1	-1	-1	-1	1	0	1	0	-1	1	1	1	1	1	1	0	-1	0	0	1	0	-1	0	-1	0	0	-1	0	-1	0	1	1	1	-1	1
1	rs6376963	0	5.008089	0	0	1	0	0	0	0	1	0	1	0	1	-1	-1	0	0	0	0	1	1	-1	0	0	0	0	-1	-1	1	1	-1	-1	-1	0	0	-1	-1	0	0	-1	0	-1	-1	-1	0	1	1	1	0	-1	-1	1	1	1	0	0	1	0	1	0	-1	0	1	1	1	0	0	1	1	-1	1	0	0	1	1	1	0	1	0	0	0	-1	-1	-1	1	1	1	0	-1	1	1	1	1	0	1	0	-1	1	-1	1	1	1	1	0	-1	0	0	-1	0	-1	0	1	0	1	-1	0	-1	0	1	1	1	-1	1
1	rs13475703	0	5.114417	0	0	-1	0	0	0	0	-1	0	-1	0	-1	-1	-1	0	0	0	0	-1	-1	-1	0	0	0	0	-1	-1	-1	-1	-1	-1	-1	0	0	-1	-1	0	0	-1	0	-1	-1	-1	0	1	-1	-1	0	-1	-1	-1	1	1	0	0	1	0	-1	0	-1	0	-1	-1	1	0	0	-1	1	-1	-1	0	0	1	1	-1	0	1	0	0	0	-1	-1	-1	-1	-1	-1	0	-1	1	1	1	-1	0	-1	0	-1	1	-1	-1	-1	-1	-1	0	-1	0	0	-1	0	-1	0	1	0	1	-1	0	-1	0	1	-1	1	-1	1
1	rs3677817	0	5.176058	0	0	-1	0	0	0	0	-1	0	1	0	-1	-1	-1	0	0	0	0	1	1	-1	0	0	0	0	-1	-1	-1	-1	-1	-1	1	0	0	1	-1	0	0	-1	0	-1	-1	-1	0	1	1	1	0	1	1	1	1	1	0	0	1	0	1	0	-1	0	1	-1	1	0	0	1	1	1	-1	0	0	1	1	1	0	1	0	0	0	-1	-1	-1	1	1	1	0	-1	1	1	1	-1	0	1	0	-1	1	1	1	-1	1	1	0	-1	0	0	1	0	-1	0	1	0	1	-1	0	-1	0	1	1	1	-1	1
1	rs8236463	0	5.579193	0	0	-1	0	0	0	0	-1	0	1	0	-1	-1	-1	0	0	0	0	1	1	-1	0	0	0	0	-1	-1	-1	-1	-1	-1	-1	0	0	-1	-1	0	0	-1	0	-1	-1	-1	0	-1	-1	-1	0	-1	-1	1	-1	1	0	0	1	0	1	0	-1	0	1	-1	-1	0	0	1	-1	-1	-1	0	0	-1	-1	1	0	-1	0	0	0	-1	-1	-1	1	1	1	0	-1	-1	-1	-1	-1	0	-1	0	-1	-1	-1	1	-1	1	1	0	-1	0	0	-1	0	-1	0	-1	0	-1	-1	0	-1	0	-1	-1	-1	-1	-1
1	rs13475705	0	5.585593	0	0	-1	0	0	0	0	-1	0	1	0	-1	-1	-1	0	0	0	0	1	1	-1	0	0	0	0	-1	-1	-1	-1	-1	-1	-1	0	0	-1	-1	0	0	-1	0	-1	-1	-1	0	1	1	1	0	-1	-1	-1	1	1	0	0	1	0	1	0	-1	0	1	-1	1	0	0	1	-1	-1	-1	0	0	1	1	1	0	1	0	0	0	-1	-1	-1	-1	1	-1	0	-1	0	1	1	-1	0	1	0	-1	1	-1	1	-1	1	1	0	-1	0	0	-1	0	-1	0	1	0	0	-1	0	-1	0	1	-1	-1	-1	1
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6	CEL-6_121305039	0	120.871297	0	0	1	0	0	0	0	1	0	1	0	1	1	1	0	0	0	0	1	1	-1	0	0	0	0	1	1	-1	-1	1	-1	1	0	0	1	-1	0	0	-1	0	-1	-1	1	0	1	1	1	0	1	1	-1	1	-1	0	0	-1	0	-1	0	1	0	1	1	1	0	0	1	1	1	1	0	0	1	1	1	0	1	0	0	0	1	-1	1	-1	-1	1	0	-1	1	1	1	1	0	1	0	1	1	1	1	1	1	1	0	1	0	0	1	0	-1	0	1	0	1	-1	0	1	0	1	-1	1	1	1
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