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|
#this is MDP pseudo genotype file, it should be tab-delimited"
#the first three/four columns should be "Chr, Locus, cM, [Mb]" (case sensitive)
#please save as Unix format text file.
#comment line always start with a '#'
#type riset or intercross
@type:intercross
@name:MDP
#abbreviation of maternal or paternal parents
@mat:-1
@pat:1
#heterozygous , optional, default is "H"
@het:0
#Unknown , optional, default is "U"
@unk:0
Chr Locus cM Mb 129P1/ReJ 129P3/J 129S1/SvImJ 129S4/SvJae 129S6/SvEv 129S6/SvEvTac 129T2/SvEmsJ 129X1/SvJ A/HeJ A/J A/WySnJ AKR/J ALR/LtJ ALS/LtJ B6.Cg-A<y>/J B6.Cg-Tub<tub>/J B6.Cg-m +/+ Lepr<db>/J B6.V-Lep<ob>/J BALB/cByJ BALB/cJ BDP/J BFM/2Ms BKS.Cg-m +/+ Lepr<db>/J BKS.HRS-Cpe<fat>/J BLG2/Ms BPH/2J BPL/1J BPN/3J BTBR T+ tf/J BUB/BnJ BXSB/MpJ C3H/HeJ C3H/HeOuJ C3H/HeSnJ C3HeB/FeJ C57BL/10J C57BL/10SnJ C57Bl/6ByJ C57BL/6J C57BLKS/J C57BR/cdJ C57L/J C58/J CAF1/J CALB/RkJ CAST/EiJ CASA/RkJ CB6F1/J CBA/CaJ CBA/J CE/J CZECHI/EiJ DBA/1J DBA/1LacJ DBA/2HaSmnJ DBA/2J DDK/Pas FVB/NJ HMI/Ms I/LnJ IDH2/Ei ILS/Bg ISS/Bg IS/CamRkJ JF1/Ms KJR/Ms KK/HlJ LEWES/EiJ LG/J LP/J MA/MyJ MAI/Pas MOLC/RkJ MOLD/RkJ MOLF/EiJ MRL/MpJ MSM/Ms MusPaha NJL/Ms NOD.NON-H2<nb1>/LtJ NOD/LtJ NON/LtJ NOR/LtJ NZB/BlNJ NZO/HlLtJ NZW/LacJ O20 P/J PANCEVO/EiJ PERA/EiJ PERC/EiJ PL/J PWD/PhJ PWK/PhJ Qsi5 RBA/DnJ RBF/DnJ RF/J RIIIS/J SB/LeJ SEA/GnJ SEC/1ReJ SEG/Pas SENCARA/PtJ SENCARB/PtJ SENCARC/PtJ SF/CamEiJ SJL/Bm SJL/J SKH2/J SKIVE/EiJ SM/J SPRET/EiJ ST/bJ SWN/Ms SWR/J SWXL4/TyJ TIRANO/EiJ WMP/PasDnJ WSB/EiJ YBR/Ei ZALENDE/EiJ
1 rs3683945 0.000 3.187480 0 0 1 0 0 0 0 1 0 -1 0 1 1 1 0 0 0 0 -1 -1 1 0 0 0 0 1 1 1 1 1 -1 1 0 0 1 -1 0 0 -1 0 1 1 -1 0 1 1 1 0 1 1 -1 1 1 0 0 1 0 1 0 1 0 -1 1 1 0 0 -1 -1 1 1 0 0 1 1 -1 0 1 0 0 0 1 1 1 -1 -1 -1 0 1 1 1 1 1 0 1 0 -1 1 1 -1 1 -1 -1 0 1 0 0 1 0 1 0 1 0 1 1 0 1 0 1 1 1 1 1
1 rs3707673 0.000 3.397472 0 0 -1 0 0 0 0 -1 0 -1 0 -1 -1 -1 0 0 0 0 -1 -1 -1 0 0 0 0 -1 -1 -1 -1 -1 -1 1 0 0 1 -1 0 0 -1 0 -1 -1 -1 0 1 1 1 0 1 1 -1 1 1 0 0 1 0 -1 0 -1 0 -1 1 1 0 0 -1 1 1 -1 0 0 1 1 -1 0 1 0 0 0 -1 -1 -1 -1 -1 -1 0 -1 1 1 1 -1 0 1 0 -1 1 1 -1 -1 -1 -1 0 -1 0 0 1 0 -1 0 1 0 1 -1 0 -1 0 1 1 -1 -1 1
1 rs6269442 0.000 3.482275 0 0 -1 0 0 0 0 -1 0 -1 0 -1 -1 -1 0 0 0 0 -1 -1 -1 0 0 0 0 -1 -1 -1 -1 -1 -1 -1 0 0 -1 -1 0 0 -1 0 -1 -1 -1 0 1 -1 -1 0 -1 -1 -1 -1 1 0 0 1 0 -1 0 -1 0 -1 1 1 0 0 -1 -1 -1 -1 0 0 -1 -1 -1 0 -1 0 0 0 -1 -1 -1 -1 -1 -1 0 -1 1 1 1 -1 0 -1 0 -1 -1 -1 -1 -1 -1 -1 0 -1 0 0 -1 0 -1 0 -1 0 -1 -1 0 -1 0 -1 -1 -1 -1 -1
1 rs6336442 0.000 3.570714 0 0 1 0 0 0 0 1 0 -1 0 1 1 1 0 0 0 0 -1 -1 1 0 0 0 0 1 1 1 1 1 -1 -1 0 0 -1 -1 0 0 -1 0 1 1 -1 0 -1 -1 -1 0 -1 -1 -1 -1 -1 0 0 -1 0 1 0 1 0 -1 -1 -1 0 0 -1 -1 -1 1 0 0 -1 -1 -1 0 -1 0 0 0 1 1 1 -1 -1 -1 0 1 1 -1 -1 1 0 -1 0 -1 -1 -1 -1 1 -1 -1 0 1 0 0 -1 0 1 0 -1 0 -1 1 0 1 0 -1 -1 -1 1 -1
1 rs13475699 0.000 3.850486 0 0 -1 0 0 0 0 -1 0 -1 0 -1 -1 -1 0 0 0 0 -1 -1 -1 0 0 0 0 -1 -1 -1 -1 -1 -1 1 0 0 1 -1 0 0 -1 0 -1 -1 -1 0 1 -1 -1 0 1 1 -1 -1 -1 0 0 -1 0 -1 0 -1 0 -1 -1 1 0 0 -1 -1 1 -1 0 0 -1 -1 -1 0 -1 0 0 0 -1 -1 -1 -1 -1 -1 0 -1 0 1 -1 -1 0 -1 0 -1 1 1 -1 -1 -1 -1 0 -1 0 0 1 0 -1 0 -1 0 1 -1 0 -1 0 1 1 -1 -1 1
1 rs13475700 0.000 4.088481 0 0 -1 0 0 0 0 -1 0 -1 0 -1 -1 -1 0 0 0 0 -1 -1 -1 0 0 0 0 -1 -1 -1 -1 -1 -1 -1 0 0 -1 -1 0 0 -1 0 -1 -1 -1 0 -1 1 1 0 -1 -1 -1 1 1 0 0 1 0 -1 0 -1 0 -1 1 -1 0 0 -1 -1 -1 -1 0 0 1 1 -1 0 1 0 0 0 -1 -1 -1 -1 -1 -1 0 -1 0 -1 1 -1 0 1 0 -1 -1 -1 -1 -1 -1 -1 0 -1 0 0 -1 0 -1 0 1 0 -1 -1 0 -1 0 -1 -1 -1 -1 -1
1 rs3658242 0.000 4.133258 0 0 -1 0 0 0 0 -1 0 1 0 -1 1 1 0 0 0 0 1 1 1 0 0 0 0 1 1 -1 -1 1 -1 1 0 0 1 -1 0 0 -1 0 1 1 -1 0 1 1 1 0 1 1 1 1 1 0 0 1 0 1 0 1 0 1 1 1 0 0 -1 1 1 -1 0 0 1 1 -1 0 1 0 0 0 1 1 1 1 1 1 0 1 1 1 1 -1 0 1 0 -1 1 1 1 -1 1 1 0 1 0 0 1 0 1 0 1 0 1 1 0 1 0 1 1 1 1 1
1 rs6243160 0.000 4.153606 0 0 -1 0 0 0 0 -1 0 1 0 -1 -1 -1 0 0 0 0 1 1 -1 0 0 0 0 -1 -1 -1 -1 -1 -1 -1 0 0 -1 -1 0 0 -1 0 -1 -1 -1 0 -1 -1 -1 0 -1 -1 -1 1 -1 0 0 -1 0 -1 0 -1 0 1 -1 -1 0 0 -1 -1 -1 -1 0 0 1 1 -1 0 1 0 0 0 -1 -1 -1 -1 -1 -1 0 -1 1 -1 -1 -1 0 1 0 -1 -1 -1 -1 -1 1 1 0 -1 0 0 -1 0 -1 0 1 0 -1 -1 0 -1 0 -1 -1 -1 -1 -1
1 rs13475701 0.000 4.516168 0 0 -1 0 0 0 0 -1 0 -1 0 -1 -1 -1 0 0 0 0 -1 -1 -1 0 0 0 0 -1 -1 -1 -1 -1 -1 1 0 0 1 -1 0 0 -1 0 -1 -1 -1 0 1 1 1 0 1 1 -1 1 1 0 0 1 0 -1 0 -1 0 -1 -1 1 0 0 -1 1 1 -1 0 0 1 1 -1 0 1 0 0 0 -1 -1 -1 -1 -1 -1 0 -1 -1 1 1 -1 0 1 0 -1 1 1 -1 -1 -1 -1 0 -1 0 0 1 0 -1 0 1 0 -1 -1 0 -1 0 1 1 1 -1 1
1 rs6198069 0.000 4.712022 0 0 -1 0 0 0 0 -1 0 -1 0 -1 -1 -1 0 0 0 0 -1 -1 -1 0 0 0 0 -1 -1 -1 -1 -1 -1 -1 0 0 -1 -1 0 0 -1 0 -1 -1 -1 0 -1 -1 -1 0 -1 -1 -1 1 1 0 0 1 0 -1 0 -1 0 -1 -1 -1 0 0 -1 -1 -1 -1 0 0 1 1 -1 0 1 0 0 0 -1 -1 -1 -1 -1 -1 0 -1 1 -1 -1 -1 0 1 0 -1 -1 -1 -1 -1 -1 -1 0 -1 0 0 -1 0 -1 0 1 0 1 -1 0 -1 0 -1 -1 -1 -1 -1
1 rs3659303 0.000 4.757965 0 0 -1 0 0 0 0 -1 0 -1 0 -1 -1 -1 0 0 0 0 -1 -1 -1 0 0 0 0 -1 -1 -1 -1 -1 -1 -1 0 0 -1 -1 0 0 -1 0 -1 -1 -1 0 -1 -1 -1 0 -1 -1 -1 -1 1 0 0 1 0 -1 0 -1 0 -1 -1 -1 0 0 -1 -1 -1 -1 0 0 -1 -1 -1 0 -1 0 0 0 -1 -1 -1 -1 -1 -1 0 -1 -1 -1 -1 -1 0 -1 0 -1 -1 -1 -1 -1 -1 -1 0 -1 0 0 -1 0 -1 0 -1 0 1 -1 0 -1 0 -1 -1 -1 -1 -1
1 rs4230167 0.000 4.762022 0 0 -1 0 0 0 0 -1 0 -1 0 -1 -1 -1 0 0 0 0 -1 -1 -1 0 0 0 0 -1 -1 -1 -1 -1 -1 -1 0 0 -1 -1 0 0 -1 0 -1 -1 -1 0 -1 -1 -1 0 -1 -1 -1 1 1 0 0 1 0 -1 0 -1 0 -1 -1 -1 0 0 -1 -1 -1 -1 0 0 1 1 -1 0 1 0 0 0 -1 -1 -1 -1 -1 -1 0 -1 0 -1 1 -1 0 1 0 -1 -1 -1 -1 -1 -1 -1 0 -1 0 0 -1 0 -1 0 1 0 -1 -1 0 -1 0 -1 -1 -1 -1 -1
1 rs4222142 0.000 4.770435 0 0 -1 0 0 0 0 -1 0 -1 0 -1 -1 -1 0 0 0 0 -1 -1 -1 0 0 0 0 -1 -1 -1 -1 -1 -1 1 0 0 1 -1 0 0 -1 0 -1 -1 -1 0 -1 -1 -1 0 1 1 -1 -1 -1 0 0 -1 0 -1 0 -1 0 -1 -1 -1 0 0 -1 -1 1 -1 0 0 -1 -1 -1 0 -1 0 0 0 -1 -1 -1 -1 -1 -1 0 -1 -1 -1 -1 -1 0 -1 0 -1 -1 1 -1 -1 -1 -1 0 -1 0 0 1 0 -1 0 -1 0 0 -1 0 -1 0 -1 -1 -1 -1 -1
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