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# Run with something like
#
# env GN2_PROFILE=/home/wrk/opt/gn-latest ./bin/genenetwork2 ./etc/default_settings.py -c ../test/requests/test-website.py http://localhost:5003
#
# Mostly to pick up the Guix GN2_PROFILE and python modules
import argparse
from link_checker import check_links
from link_checker import check_packaged_js_files
from mapping_tests import check_mapping
from navigation_tests import check_navigation
from correlation_tests import check_correlations, check_correlations_correctness
from main_web_functionality import check_main_web_functionality
import link_checker
import sys
# Imports for integration tests
from unittest import TestSuite, TextTestRunner, TestLoader
print("Mechanical Rob firing up...")
def host_is_online(host):
import time
import requests
for count in range(1, 10):
try:
time.sleep(count)
requests.get(host)
return True
except Exception as cre:
print(f"Retrying in {count + 1} seconds ...")
return False
def run_all(args_obj, parser):
print("")
print("Running all tests.")
print(args_obj)
assert host_is_online(args_obj.host), f"Could not connect to {args_obj.host}"
link_checker.DO_FAIL = args_obj.fail
check_main_web_functionality(args_obj, parser)
check_links(args_obj, parser)
check_packaged_js_files(args_obj, parser)
check_mapping(args_obj, parser)
check_correlations(args_obj, parser)
check_correlations_correctness(args_obj, parser) # activate once all correlations are verified
# TODO: Add other functions as they are created.
def print_help(args_obj, parser):
print(parser.format_help())
def dummy(args_obj, parser):
print("Not implemented yet.")
def initTest(klass, gn2_url, es_url):
loader = TestLoader()
methodNames = loader.getTestCaseNames(klass)
return [klass(mname, gn2_url, es_url) for mname in methodNames]
desc = """
This is Mechanical-Rob - an automated web server tester for
Genenetwork.org
"""
parser = argparse.ArgumentParser(description=desc)
parser.add_argument("--fail", help="Fail and stop on any error", action="store_true")
parser.add_argument(
"-d",
"--database",
metavar="DB",
type=str,
default="db_webqtl_s",
help="Use database (default db_webqtl_s)",
)
parser.add_argument(
"host",
metavar="HOST",
type=str,
default="http://localhost:5003",
help="The url to the web server",
)
parser.add_argument(
"-a",
"--all",
dest="accumulate",
action="store_const",
const=run_all,
default=print_help,
help="Runs all tests.",
)
parser.add_argument(
"-l",
"--link-checker",
dest="accumulate",
action="store_const",
const=check_links,
default=print_help,
help="Checks for dead links.",
)
parser.add_argument(
"-f",
"--main-functionality",
dest="accumulate",
action="store_const",
const=check_main_web_functionality,
default=print_help,
help="Checks for main web functionality.",
)
parser.add_argument(
"-m",
"--mapping",
dest="accumulate",
action="store_const",
const=check_mapping,
default=print_help,
help="Checks for mapping.",
)
parser.add_argument(
"-c",
"--correlations",
dest="accumulate",
action="store_const",
const=check_correlations,
default=print_help,
help="Checks that correlations run correctly.",
)
parser.add_argument(
"-e",
"--correlations-correctness",
dest="accumulate",
action="store_const",
const=check_correlations_correctness,
default=print_help,
help="Check that the correlation results are correct"
)
args = parser.parse_args()
args.accumulate(args, parser)
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