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{% extends "base.html" %}
{% block title %}WCGNA analysis{% endblock %}
{% block content %}
<!-- Start of body -->
<style type="text/css">
#terminal {
margin-top: 10px;
}
</style>
<link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='xterm/xterm.min.css') }}" />
<div class="container">
<div class="col-md-5">
<h1 class="mx-3 my-2 "> WGCNA analysis parameters</h1>
{% if request.form['trait_list'].split(",")|length < 4 %} <div class="alert alert-danger" role="alert">
<span class="glyphicon glyphicon-exclamation-sign" aria-hidden="true"></span>
<span class="sr-only">Error:</span>
<h2>Too few phenotypes as input</h2>
Please make sure you select enough phenotypes / genes to perform WGCNA. Your collection needs to contain at least 4 different phenotypes. You provided {{request.form['trait_list'].split(',')|length}} phenotypes as input.
</div>
{% else %}
<form class="col-md-12" action="/wgcna_results" method="post" class="form-horizontal" id="wgcna_form">
<input type="hidden" name="trait_list" id="trait_list" value="{{request.form['trait_list']}}">
<div class="form-group row ">
<label for="SoftThresholds" class="col-md-3 col-form-label col-form-label-sm">Soft threshhold</label>
<div class="col-md-9">
<input type="text" class="form-control form-control-md" value="1,2,3,4,5,6,7,8,9" id="SoftThresholds" name="SoftThresholds">
</div>
</div>
<div class="form-group row ">
<label for="MinModuleSize" class="col-md-3 col-form-label col-form-label-sm">Minimum module size:</label>
<div class="col-md-9">
<input type="text" class="form-control form-control-md" id="MinModuleSize" value="30" name="MinModuleSize">
</div>
</div>
<div class="form-group row">
<label for="TOMtype" class="col-md-3 col-form-label col-form-label-sm">TOMtype:</label>
<div class="col-md-9">
<select class="form-control" id="TOMtype" name="TOMtype">
<option value="unsigned">unsigned</option>
<option value="signed">signed</option>
</select>
</div>
</div>
<div class="form-group row ">
<label for="mergeCutHeight" class="col-md-3 col-form-label col-form-label-sm">mergeCutHeight:</label>
<div class="col-md-9">
<input type="text" class="form-control form-control-md" id="mergeCutHeight" value="0.25" name="mergeCutHeight">
</div>
</div>
<div class="form-group row">
<label for="corType" class="col-md-3 col-form-label col-form-label-sm">corType:</label>
<div class="col-md-9">
<select class="form-control col-md-9" id="corType" name="corType">
<option value="pearson">pearson</option>
<option value="bicor">bicor</option>
</select>
</div>
</div>
<div class="form-group">
<div class="text-center">
<input type="submit" class="btn btn-primary" value="Run WGCNA using these settings" />
</div>
</div>
</form>
{% endif %}
</div>
<div class="col-md-7">
<div id="terminal" class="mt-2">
</div>
</div>
</div>
<script src="{{ url_for('js', filename='xterm/xterm.min.js') }}" type="text/javascript"></script>
<script src="{{ url_for('js', filename='jquery/jquery.min.js') }}" type="text/javascript"></script>
<script src="https://cdn.jsdelivr.net/npm/xterm-addon-fit@0.5.0/lib/xterm-addon-fit.min.js"></script>
<script>
document.addEventListener('DOMContentLoaded', function() {
let term = new Terminal({
cursorBlink: true,
lineHeight: 1.3,
scrollback: true,
macOptionIsMeta: true
});
let termDebugs = {
general: "Computation process to be displayed here....",
success: "Computation in process ......",
fail: "Too few phenotypes as input must be >=4"
}
const fitAddon = new FitAddon.FitAddon()
term.loadAddon(fitAddon)
term.open(document.getElementById('terminal'));
term.setOption('theme', {
background: '#300a24'
});
term.writeln(termDebugs.general)
wgcnaForm = document.querySelector("#wgcna_form")
fitAddon.fit()
term.onData((data) => {
term.write(data)
})
if (wgcnaForm) {
} else {
term.writeln(termDebugs.fail)
}
$(document).on('submit', '#wgcna_form', function(e) {
term.writeln(termDebugs.success)
e.preventDefault();
var form = $(this);
$.ajax({
type: 'POST',
url: '/wgcna_results',
data: form.serialize(),
success: function(data) {
document.write(data)
}
})
})
})
</script>
{% endblock %}
|
