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{% extends "index_page.html" %}
{% block css %}
<style type="text/css">
.page-header {
padding: 1em;
}
</style>
{% endblock %}
{% block title %}Phenotype: {{ name }}{% endblock %}
{% block content %}
{% set published_p = "http://rdf.ncbi.nlm.nih.gov/pubmed" in metadata.references.id %}
<h1 class="page-header">
Phenotype: {{ metadata.traitName }} ({{ metadata.abbreviation }})
</h1>
<div class="container">
<table class="table">
<tr>
<td><b>Species</b></td>
<td>{{ metadata.species or "N/A" }}</td>
</tr>
<tr>
<td><b>Group</b></td>
<td>{{ metadata.group or "N/A" }}</td>
</tr>
<tr>
<td><b>Phenotype</b></td>
<td>{{ metadata.description or "N/A"}}</td>
</tr>
{% if metadata.creator %}
<tr>
<td><b>Authors</b></td>
<td>
{% if metadata.creator is iterable %}
{{ metadata.creator |join(", ") }}
{% for creator in metadata.creator %}
{{ creator }}
{% endfor %}
{% else %}
metadata.creator
{% endif %}
{% endif %}
</td>
</tr>
{% if metadata.references.id %}
<tr>
<td>
<b>Publication</b>
{% if published_p == False %}
<sup><small>(unpublished)</small></sup>
{% endif %}
</td>
<td>
<i>
{% if metadata.references.title %}
{{ metadata.references.title }}.
{% endif %}
</i>
{% if metadata.references.creator %}
{{ ', '.join(metadata.references.creator) }}.
{% endif %}
{{ metadata.references.year }}
{{ metadata.references.month }}
{% if metadata.references.volume and metadata.references.page %}
{{ metadata.references.volume }}:{{ metadata.references.page }}
{% endif %}
<sup>
<a href="{{ metadata.references.id }}" target="_blank"><small>
{% if published_p %}
PubMed
{% else %}
GN RDF Page
{% endif %}
<sup> <span class="glyphicon glyphicon-new-window"></span></sup></small></a>
</sup>
</td>
</tr>
{% endif %}
<tr>
<td><b>Database</b></td>
<td>
{% for database in metadata.dataset %}
{% set dataset_url = url_for('get_dataset', name=database.identifier)%}
<a href="{{ dataset_url }}" target="blank">{{ database.prefLabel }}</a> <br/>
{% endfor %}
</td>
</tr>
<tr>
<td><b>Mean</b></td>
<td>{{ metadata.mean or "N/A"}}</td>
</tr>
<tr>
<td><b>Peak -logP</b></td>
<td>{{ metadata.lodScore or "N/A"}}</td>
</tr>
<tr>
<td><b>Effect Size</b></td>
<td>{{ metadata.additive or "N/A"}}</td>
</tr>
{% if metadata.locus %}
<tr>
<td><b>Peak Location</b></td>
<td>Chr{{ metadata.locus.chromosome }}: {{ metadata.locus.mb }}</td>
</tr>
{% endif %}
{% if metadata.references.id %}
<tr>
<td><b>Resource Links</b></td>
<td>
<a href="{{ metadata.references.id }}" target="_blank">
{% if published_p %}
PubMed
{% else %}
GN RDF Page
{% endif %}
</a>
</td>
</tr>
{% endif %}
</table>
</div>
{% endblock %}
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