path: root/gn2/wqflask/templates/oauth2/view-resource.html

{%extends "base.html"%}
{%from "oauth2/profile_nav.html" import profile_nav%}
{%from "oauth2/display_error.html" import display_error%}
{%block title%}View User{%endblock%}
{%block css%}
<link rel="stylesheet" href="/static/new/css/pills.css" />
<link rel="stylesheet" href="/static/new/css/resource-roles.css" />
{%endblock%}
{%block content%}
<div class="container" style="min-width: 1250px;">
  {{profile_nav("resources", user_privileges)}}
  <h3>Resources</h3>

  {{flash_me()}}

  <div class="container-fluid">

    {%if resource_error is defined %}
    {{display_error("Resource", resource_error)}}
    {%else%}
    <div class="row">
      <h3>Resource Details</h3>
      <table class="table">
	<caption>Resource: {{resource.resource_name}}</caption>
	<thead>
	  <tr>
	    <th>Name</th>
	    <th>Category</th>
	    <th colspan="3" style="text-align: center;">Actions</th>
	  </tr>
	</thead>

	<tbody>
	  <tr>
	    <td>{{resource.resource_name}}</td>
	    <td>{{resource.resource_category.resource_category_description}}</td>
	    <td>
	      <form method="POST"
		    action="{{url_for(
			    'oauth2.resource.toggle_public',
			    resource_id=resource.resource_id)}}">

		<div class="input-group">
		  {%if resource.public%}
		  <input type="submit" value="Make Private"
			 class="btn btn-success" />
		  {%else%}
		  <input type="submit" value="Make Public"
			 class="btn btn-danger" />
		  {%endif%}
		</div>
	      </form>
	    </td>
	    <td>
	      <a href="{{url_for(
		       'oauth2.resource.edit_resource',
		       resource_id=resource.resource_id)}}"
		 title="Edit resource"
		 class="btn btn-warning">Edit</a>
	    </td>
	    <td>
	      <a href="{{url_for(
		       'oauth2.resource.delete_resource',
		       resource_id=resource.resource_id)}}"
		 title="Edit resource"
		 class="btn btn-danger">Delete</a>
	    </td>
	  </tr>
	</tbody>
      </table>
    </div>

    <div class="row">
      <h3>Resource Data</h3>
      <table class="table">
	<caption>Resource Data</caption>
	<thead>
	  <tr>
	    {%if resource.resource_category.resource_category_key == "phenotype"%}
	    <th>Trait</th>
	    <th>Description</th>
	    <th>Year</th>
	    {%endif%}
	    <th>Dataset Name</th>
	    <th>Full Name</th>
	    <th>Actions</th>
	  </tr>
	</thead>

	<tbody>
	  {%for data_item in resource.resource_data:%}
	  <tr>
	    {%if resource.resource_category.resource_category_key == "phenotype"%}
	    <td>
	      <a href="/show_trait?trait_id={{data_item.PublishXRefId}}&dataset={{data_item.dataset_name}}"
		 title="Trait Data and Analysis for {{data_item.PublishXRefId}}"
		 target="_blank">
		{{data_item.PublishXRefId}}
	      </a>
	    </td>
	    <td>{{data_item.description}}</td>
	    <td>
	      {%if data_item.PubMed_ID%}
	      <a href="https://pubmed.ncbi.nlm.nih.gov/{{data_item.PubMed_ID}}/"
		 title="{{data_item.Title}}" target="_blank">
		{{data_item.Year}}
	      </a>
	      {%else%}
	      {{data_item.Year}}
	      {%endif%}
	    </td>
	    {%endif%}
	    <td>
	      <a href="https://gn1.genenetwork.org/webqtl/main.py?FormID=sharinginfo&GN_AccessionId={{data_item.accession_id}}&InfoPageName={{data_item.dataset_name}}"
		 title="Link to information on dataset '{{data_item.dataset_fullname}}'"
		 target="_blank">
		{{data_item.dataset_name}}
	      </a>
	    </td>
	    <td>{{data_item.dataset_fullname}}</td>
	    <td>
	      <form action="{{url_for('oauth2.resource.unlink_data_from_resource')}}"
		    method="POST">
		<input type="hidden" name="resource_id"
		       value="{{resource.resource_id}}" />
		<input type="hidden" name="data_link_id"
		       value="{{data_item.data_link_id}}" />
		<input type="submit" value="Unlink" class="btn btn-danger" />
	      </form>
	    </td>
	  </tr>
	  {%else%}
	  <tr>
	    <td colspan="2">
	      <span class="glyphicon glyphicon-info-sign text-danger">
	      </span>
	      &nbsp;
	      <strong class="text-info">No linked data.</strong>
	    </td>
	  </tr>
	  {%endfor%}
	</tbody>
      </table>
      <form action="{{url_for('oauth2.resource.view_resource', resource_id=resource.resource_id)}}"
	    method="GET"
	    style="width:100%;text-align:center;">
	<input type="hidden" name="page" value="{{page}}" />
	<input type="hidden" name="count_per_page" value="{{count_per_page}}" />

	<input type="submit" name="submit" value="prev" class="btn btn-info"
	       {%if page == 1 %}disabled="disabled"{%endif%} />
	<input type="submit" name="submit" value="next" class="btn btn-info"
	       {%if resource.resource_data | length < count_per_page %}
	       disabled="disabled"
	       {%endif%} />
      </form>
    </div>

    <div class="row">
      <h3>Unlinked Data</h3>
      <table class="table">
	<caption>Link Data</caption>
	<thead>
	  <tr>
	    {%if resource.resource_category.resource_category_key == "phenotype"%}
	    <th>Trait</th>
	    <th>Description</th>
	    <th>Year</th>
	    {%endif%}
	    <th>Dataset Name</th>
	    <th>Dataset FullName</th>
	    <th>Actions</th>
	  </tr>
	</thead>
	<tbody>
	  {%if unlinked_error is defined%}
	  {{display_error("Unlinked Data Error", unlinked_error)}}
	  {%else%}
	  {%for data_item in unlinked_data:%}
	  <tr>
	    {%if resource.resource_category.resource_category_key == "phenotype"%}
	    <td>
	      <a href="/show_trait?trait_id={{data_item.PublishXRefId}}&dataset={{data_item.dataset_name}}"
		 title="Trait Data and Analysis for {{data_item.PublishXRefId}}"
		 target="_blank">
		{{data_item.PublishXRefId}}
	      </a>
	    </td>
	    <td>{{data_item.description}}</td>
	    <td>
	      {%if data_item.PubMed_ID%}
	      <a href="https://pubmed.ncbi.nlm.nih.gov/{{data_item.PubMed_ID}}/"
		 title="{{data_item.Title}}" target="_blank">
		{{data_item.Year}}
	      </a>
	      {%else%}
	      {{data_item.Year}}
	      {%endif%}
	    </td>
	    {%endif%}
	    <td>
	      <a href="https://gn1.genenetwork.org/webqtl/main.py?FormID=sharinginfo&GN_AccessionId={{data_item.accession_id}}&InfoPageName={{data_item.dataset_name}}"
		 title="Dataset Group: {{data_item.dataset_name}}"
		 target="_blank">
		{{data_item.dataset_name}}
	      </a>
	    </td>
	    <td>{{data_item.dataset_fullname}}</td>
	    <td>
	      <form method="POST"
		    action="{{url_for('oauth2.resource.link_data_to_resource')}}">
		<input type="hidden" name="resource_id"
		       value="{{resource.resource_id}}" />
		<input type="hidden" name="data_link_id"
		       value="{{data_item.data_link_id}}" />
		<input type="hidden" name="dataset_type"
		       value="{{resource.resource_category.resource_category_key | lower}}" />
		<input type="submit" value="Link" class="btn btn-info"
		       {%if resource.resource_category.resource_category_description == "mRNA Dataset" and resource.resource_data | count != 0%}
		       disabled="disabled"
		       {%endif%} />
	      </form>
	    </td>
	  </tr>
	  {%else%}
	  <span class="glyphicon glyphicon-info-sign text-info">
	  </span>
	  &nbsp;
	  <strong class="text-info">No data to link.</strong>
	  {%endfor%}
	  {%endif%}
	</tbody>
      </table>
    </div>

    <div class="row">
      <h3>Available Resource Roles</h3>
      <div class="resource_roles">
        {%for role in resource_roles%}
        <a class="pill"
           href="{{url_for('oauth2.resource.view_resource_role',
                 resource_id=resource.resource_id,
                 role_id=role.role_id)}}"
           title="Role page for role named '{{role.role_name}}'">
          {{role.role_name}}
        </a>
        {%endfor%}
      </div>
      <hr />
      <a title="create a new role for this resource"
         href="{{url_for('oauth2.resource.create_resource_role',
               resource_id=resource.resource_id)}}"
         class="btn btn-info">New Role</a>
    </div>

    <div class="row">
      <h3>Users: Assigned Roles</h3>
      {%if users_n_roles_error is defined%}
      {{display_error("Users and Roles", users_n_roles_error)}}
      {%else%}
      <table class="table">
	<caption>User Roles</caption>
	<thead>
	  <tr>
	    <th>User Email</th>
	    <th>User Name</th>
	    <th>User Group</th>
	    <th colspan="2">Assigned Roles</th>
	  </tr>
	</thead>
	<tbody>
	  {%for user_row in users_n_roles%}
	  <tr>
	    <td rowspan="{{user_row.roles | length + 1}}">{{user_row.user.email}}</td>
	    <td rowspan="{{user_row.roles | length + 1}}">{{user_row.user.name}}</td>
	    <td rowspan="{{user_row.roles | length + 1}}">
	      {{user_row.user_group.group_name}}</td>
	    <th>Role</th>
	    <th>Action</th>
	  </tr>
	  {%for role in user_row.roles%}
	  <tr>
	    <td>
	      <a href="{{url_for(
		       'oauth2.role.role',
		       role_id=role.role_id)}}"
		 title="Details for '{{role.role_name}}' role">
		{{role.role_name}}
	      </a>
	    </td>
	    <td>
	      <form action="{{url_for('oauth2.resource.unassign_role',
			    resource_id=resource.resource_id)}}"
		    method="POST">
		<input type="hidden" name="user_id"
		       value="{{user_row.user.user_id}}" />
		<input type="hidden" name="role_id"
		       value="{{role.role_id}}">
		<input type="submit"
		       value="Unassign"
		       class="btn btn-danger"
		       {%if user_row.user.user_id==this_user.user_id%}
		       disabled="disabled"
		       {%endif%}>
	      </form>
	    </td>
	  </tr>
	  {%endfor%}
	  {%else%}
	  <tr>
	    <td colspan="5">
	      <span class="glyphicon glyphicon-info-sign text-info">
	      </span>
	      &nbsp;
	      <span class="text-info">
		There are no users assigned any role for this resource.
	      </span>
	    </td>
	  </tr>
	  {%endfor%}
	</tbody>
      </table>
      {%endif%}
    </div>

    <div class="row">
      <h3>Assign</h3>
      {%if resource_roles_error is defined%}
      {{display_error("Resource Roles", resource_roles_error)}}
      {%elif users_error is defined%}
      {{display_error("Users", users_error)}}
      {%else%}
      <form action="{{url_for(
		    'oauth2.resource.assign_role',
		    resource_id=resource.resource_id)}}"
	    method="POST" autocomplete="off">
	<input type="hidden" name="resource_id" value="{{resource_id}}" />
	<div class="form-group">
	  <label for="role_id" class="form-label">Role</label>
	  <select class="form-control" name="role_id"
		  id="role_id" required="required">
	    <option value="">Select role</option>>
	    {%for rrole in resource_roles%}
	    <option value="{{rrole.role_id}}">
	      {{rrole.role_name}}
	    </option>
	    {%endfor%}
	  </select>
	</div>
	<div class="form-group">
	  <label for="user-email" class="form-label">User Email</label>
	  <input list="users-list" name="user_email" class="form-control"
		 {%if users | length == 0%}
		 disabled="disabled"
		 {%endif%}
		 required="required" />
	  <datalist id="users-list">
	    {%for user in users%}
	    <option value="{{user.email}}">{{user.email}} - {{user.name}}</option>
	    {%endfor%}
	  </datalist>
	</div>

	<input type="submit" class="btn btn-primary" value="Assign"
	       {%if users | length == 0%}
	       disabled="disabled"
	       {%endif%} />
      </form>
      {%endif%}
    </div>
    {%endif%}

  </div>

</div>
{%endblock%}