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path: root/gn2/wqflask/templates/gsearch_pheno.html
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{% extends "base.html" %}
{% block title %}Search Results{% endblock %}
{% block css %}
    <link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='DataTables/css/jquery.dataTables.css') }}" />
    <link href="https://code.jquery.com/ui/1.12.1/themes/base/jquery-ui.css" rel="stylesheet" type="text/css" />
    <link rel="stylesheet" type="text/css" href="/static/new/css/show_trait.css" />
{% endblock %}
{% block content %}
<!-- Start of body -->

    <div class="container">

        <h3>GN searched for the term(s) <b>"{{ terms }}"</b> in 51 datasets and 13763 traits across 10 species<br/>
            and found <b>{{ trait_count }}</b> results that match your query.<br/>
            You can filter these results by adding key words in the fields below<br/>
            and you can also sort results on most columns.</h3>
        <p>To study a record, click on its ID below.<br />Check records below and click Add button to add to selection.</p>

        <div>
            <br />
            <button class="btn btn-default" id="select_all"><span class="glyphicon glyphicon-ok"></span> Select All</button>
            <button class="btn btn-default" id="deselect_all"><span class="glyphicon glyphicon-remove"></span> Deselect All</button>
            <button class="btn btn-default" id="invert"><span class="glyphicon glyphicon-resize-vertical"></span> Invert</button>
            <button class="btn btn-success" id="add" disabled ><span class="glyphicon glyphicon-plus-sign"></span> Add</button>
            <input type="text" id="searchbox" class="form-control" style="width: 180px; display: inline;" placeholder="Search This Table For ...">
            <input type="text" id="select_top" class="form-control" style="width: 120px; display: inline;" placeholder="Select Top ...">
            <form id="export_form" method="POST" action="/export_traits_csv" style="display: inline;">
              <input type="hidden" name="headers" id="headers" value="{% for field in header_fields %}{{ field }},{% endfor %}">
              <input type="hidden" name="database_name" id="database_name" value="None">
              <input type="hidden" name="export_data" id="export_data" value="">
              <button class="btn btn-default" id="export_traits">Download CSV</button>
            </form>
            <br />
            <br />
            <div id="table_container" style="width: 2000px;">
              <table id="trait_table" class="table-hover table-striped cell-border" style="float: left;">
                <tbody>
                 <td colspan="100%" align="center"><br><b><font size="15">Loading...</font></b><br></td>
                </tbody>
            </table>
            </div>
        </div>
    </div>

<!-- End of body -->

{% endblock %}

{% block js %}
    <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='js_alt/md5.min.js') }}"></script>
    <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='DataTables/js/jquery.dataTables.min.js') }}"></script>
    <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='DataTablesExtensions/scroller/js/dataTables.scroller.min.js') }}"></script>
    <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='jszip/jszip.min.js') }}"></script>
    <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='DataTablesExtensions/plugins/sorting/natural.js') }}"></script>
    <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='DataTablesExtensions/colReorder/js/dataTables.colReorder.js') }}"></script>
    <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='DataTablesExtensions/colResize/dataTables.colResize.js') }}"></script>
    <script language="javascript" type="text/javascript" src="/static/new/javascript/search_results.js"></script>
    <script language="javascript" type="text/javascript" src="/static/new/javascript/table_functions.js"></script>
    <script language="javascript" type="text/javascript" src="/static/new/javascript/create_datatable.js"></script>

    <script type='text/javascript'>
      var getParams = function(url) {
        let parser = document.createElement('a');
        parser.href = url;
        let params = parser.search.substring(1);
        if(params.length > 0) {
          return ('?'+params);
        }
        return params;
      };
    </script>

    <script type='text/javascript'>
      var traitsJson = {{ trait_list|safe }};
    </script>

    <script type="text/javascript" charset="utf-8">
        $(document).ready( function () {
          var tableId = "trait_table";

          columnDefs = [
            {
              'data': null,
              'orderDataType': "dom-checkbox",
              'width': "10px",
              'targets': 0,
              'render': function(data) {
                return '<input type="checkbox" name="searchResult" class="trait_checkbox checkbox" value="' + data.hmac + '">'
              }
            },
            {
              'title': "Index",
              'type': "natural",
              'width': "30px",
              'targets': 1,
              'data': "index",
              'defaultContent': "N/A"
            },
            {
              'title': "Species",
              'type': "natural",
              'width': "60px",
              'targets': 2,
              'data': "species",
              'defaultContent': "N/A"
            },
            {
              'title': "Group",
              'type': "natural",
              'width': "100px",
              'targets': 3,
              'data': "group",
              'defaultContent': "N/A"
            },
            {
              'title': "Record",
              'type': "natural",
              'data': null,
              'width': "60px",
              'targets': 4,
              'orderDataType': "dom-inner-text",
              'render': function(data) {
                return '<a target="_blank" href="/show_trait?trait_id=' + data.name + '&dataset=' + data.dataset + '">' + data.display_name + '</a>'
              }
            },
            {
              'title': "Description",
              'type': "natural",
              'width': "500px",
              'targets': 5,
              'data': null,
              'render': function(data) {
                try {
                    return decodeURIComponent(escape(data.description))
                } catch(err) {
                    return data.description
                }
              }
            },
            {
              'title': "Mean",
              'type': "natural-minus-na",
              'width': "30px",
              'targets': 6,
              'data': "mean",
              'defaultContent': "N/A"
            },
            {
              'title': "Authors",
              'type': "natural",
              'width': "300px",
              'targets': 7,
              'data': "authors_display",
              'defaultContent': "N/A"
            },
            {
              'title': "Year",
              'type': "natural-minus-na",
              'data': null,
              'orderDataType': "dom-inner-text",
              'width': "25px",
              'targets': 8,
              'render': function(data) {
                if ("pubmed_id" in data){
                  return '<a href="' + data.pubmed_link + '">' + data.pubmed_text + '</a>'
                } else {
                  return data.pubmed_text
                }
              },
              'orderSequence': [ "desc", "asc"]
            },
            {
              'title': "<div style='text-align: right; padding-right: 10px;'>Peak</div> <div style='text-align: right;'>-logP <a href=\"{{ url_for('glossary_blueprint.glossary') }}#LRS\" target=\"_blank\" style=\"color: white;\"><sup>?</sup></a></div>",
              'type': "natural-minus-na",
              'data': "LRS_score_repr",
              'defaultContent': "N/A",
              'width': "60px",
              'targets': 9,
              'orderSequence': [ "desc", "asc"]
            },
            {
              'title': "Peak Location",
              'type': "natural-minus-na",
              'width': "125px",
              'targets': 10,
              'data': "max_lrs_text",
              'defaultContent': "N/A"
            },
            {
              'title': "Additive Effect<a href=\"{{ url_for('glossary_blueprint.glossary') }}#A\" target=\"_blank\" style=\"color: white;\"><sup>?</sup></a>",
              'type': "natural-minus-na",
              'data': "additive",
              'defaultContent': "N/A",
              'width': "60px",
              'targets': 11,
              'orderSequence': [ "desc", "asc"]
            }
          ]

          tableSettings = {
            "createdRow": function ( row, data, index ) {
                $('td', row).eq(0).attr("style", "text-align: center; padding: 4px 10px 2px 10px;");
                $('td', row).eq(1).attr("align", "right");
                $('td', row).eq(5).attr('title', $('td', row).eq(5).text());
                if ($('td', row).eq(5).text().length > 150) {
                    $('td', row).eq(5).text($('td', row).eq(5).text().substring(0, 150));
                    $('td', row).eq(5).text($('td', row).eq(5).text() + '...')
                }
                $('td', row).eq(6).attr('title', $('td', row).eq(6).text());
                if ($('td', row).eq(6).text().length > 150) {
                    $('td', row).eq(6).text($('td', row).eq(6).text().substring(0, 150));
                    $('td', row).eq(6).text($('td', row).eq(6).text() + '...')
                }
                $('td', row).eq(6).attr("align", "right");
                $('td', row).slice(8,11).attr("align", "right");
                $('td', row).eq(1).attr('data-export', $('td', row).eq(1).text());
                $('td', row).eq(2).attr('data-export', $('td', row).eq(2).text());
                $('td', row).eq(3).attr('data-export', $('td', row).eq(3).text());
                $('td', row).eq(4).attr('data-export', $('td', row).eq(4).text());
                $('td', row).eq(5).attr('data-export', $('td', row).eq(5).text());
                $('td', row).eq(6).attr('data-export', $('td', row).eq(6).text());
                $('td', row).eq(7).attr('data-export', $('td', row).eq(7).text());
                $('td', row).eq(8).attr('data-export', $('td', row).eq(8).text());
                $('td', row).eq(9).attr('data-export', $('td', row).eq(9).text());
                $('td', row).eq(10).attr('data-export', $('td', row).eq(10).text());
              },
              {% if trait_count <= 20 %}
              "scroller":  false
              {% else %}
              "scroller": true
              {% endif %}
          }

          create_table(tableId, traitsJson, columnDefs, tableSettings);

        });
    </script>
{% endblock %}