gn2/wqflask/templates/dataset.html


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{% extends "base.html" %}

{% block css %}
<style type="text/css">
 .page-header, .dataset-content {
     padding-left: 10%;
     line-height: 1.375;
 }

 .dataset-content blockquote {
     font-size: 13px;
 }
 .page-header h1 {
     font-size: 1.8em;
     line-height: 1.375;
 }
 .panel-about {
     background: #F8F8F8;
     max-width: 35em;
     margin: 10px;
 }
 .panel-metadata {
     display: inline-block;
     width: fit-content;
     height: fit-content;
     padding: 0;
     {% if dataset.description or dataset.specificity or dataset.experimentDesignInfo or
	 dataset.caseInfo or dataset.tissue or
	 dataset.platform or dataset.processingInfo or
	 dataset.notes or dataset.references or dataset.acknowledgment or dataset.contributors
	 %}
     float: right;
     {% endif %}
 }

 .panel-metadata dt {
     color: green;
 }

 .panel-metadata dt::after {
     content: ":";
 }

 .search {
     width: 50%;
     margin: 1em auto;
 }
 .has-search .form-control-feedback {
     right: initial;
     left: 0;
     color: #ccc;
 }

 .has-search .form-control {
     padding-right: 12px;
     padding-left: 34px;
 }

 .search {
     transform: scale(1.5, 1.5);
 }
 .search input {
     min-width: 17em;
 }
 .dataset-search {
     padding: 0 17%;
 }
</style>
{% endblock %}

{% block title %}Dataset: {{ name }}{% endblock %}
{% block content %}

{% if dataset %}

<div class="container dataset-content">
    <header class="page-header text-justify">
	<h1>
	    {% if dataset.title or dataset.label or dataset.altLabel %}
	    {{ dataset.title or dataset.label or dataset.altLabel }}
	    {% if dataset.title != dataset.altLabel and dataset.label != dataset.altLabel %}
	    <br/>
            <small>({{ dataset.altLabel }})</small>
	    {% endif %}
	    {% else %}
            {{ name }}
            {% endif %}
	</h1>
    </header>
    <div class="panel-about panel panel-info panel-metadata text-muted">
        <div class="panel-heading">
	    <strong>
		<span class="glyphicon glyphicon-info-sign aria-hidden=true"></span>
		Details
	    </strong>
	    {% if dataset.accessionId %}
	    <small>
		<a href="https://gn1.genenetwork.org/webqtl/main.py?FormID=sharinginfo&GN_AccessionId={{ dataset.accessionId.split('GN')[-1] }}" target="_blank">(GN1 Link)</a>
	    </small>
	    {% endif %}
	</div>
        <div class="panel-body">
            <dl class="dl-horizontal">
		{% if dataset.label != dataset.altLabel and dataset.label != dataset.title %}
		<dt>Name</dt>
		<dd> {{ dataset.label }} </dd>
		{% endif %}
                {% if dataset.created %}
		<dt>Created</dt>
		<dd>{{ dataset.created }}</dd>
		{% endif %}
                {% if dataset.inbredSet %}
		<dt>Group</dt>
		<dd>{{ dataset.inbredSet.label}}</dd>
		{% endif %}

		{% if dataset.accessionId %}
		<dt>Accession Id</dt>
		<dd>{{ dataset.accessionId}}</dd>
		{% endif %}

                {% if dataset.hasGeoSeriesId %}
		<dt>GEO Series</dt>
		<dd>
		    <a href="{{ dataset.geoSeriesId }}" target="_blank">{{ dataset.geoSeriesId.split("=")[-1] }}</a>
		</dd>
		{% endif %}

                {% if dataset.tissue %}
		<dt>Tissue</dt>
		<dd>{{ dataset.tissue.label }}</dd>
		{% endif %}

		{% if dataset.platform %}
		<dt>Platforms</dt>
		<dd>
		    {{ dataset.platform.label }}
		    [<a href="{{ dataset.platform.id}}" target="_blank">
		    {{ dataset.platform.prefLabel}}
		    </a>]
		</dd>
		{% endif %}

                {% if dataset.normalization %}
		<dt>Normalization</dt>
		<dd>{{ dataset.normalization.label }}</dd>
		{% endif %}

                {% if dataset.contactPoint %}
                <dt>Investigator</dt>
                <dd>
		    {% if dataset.contactPoint.contactWebUrl %}
		    <a href="{{ dataset.contactPoint.contactWebUrl }}" target="_blank">
			{{ dataset.contactPoint.contactName }}
		    </a>
		    {% else %}
		    {{ dataset.contactPoint.contactName }}
		    {% endif %}
                </dd>
                {% endif %}

		{% if dataset.organization %}
		<dt>Organization</dt>
		<dd>{{ dataset.organization }}</dd>
		{% endif %}
            </dl>
	</div>
    </div>

    <div id="dataset-description" class="container row dataset-metadata">
	{% if dataset.description %}
	<h3>
	    <strong>Description</strong>
	    {% if dataset.editable %}
	    <sup>
		[&nbsp;
		<a href="/metadata/edit?type=dcat:Dataset&section=description&name={{ dataset.label}}">edit</a>
		&nbsp;]
	    </sup>
	    {% endif %}
	</h3>
        <div>{{ dataset.description|safe }}</div>
        {% endif %}

	{% if dataset.experimentType %}
        <h3>
	    <strong>Experiment Type</strong>
	    {% if dataset.editable %}
	    <sup>
		[&nbsp;
		<a href="/metadata/edit?type=dcat:Dataset&section=experimentType&name={{ dataset.label}}">edit</a>
		&nbsp;]
	    </sup>
	    {% endif %}
	</h3>
        <div>{{ dataset.experimentType|safe }}</div>
        {% endif %}

	{% if dataset.specifics %}
	<h3>
	    <strong>Specifics of this Dataset</strong>
	    {% if dataset.editable %}
	    <sup>
		[&nbsp;
		<a href="/metadata/edit?type=dcat:Dataset&section=specifics&name={{ dataset.label}}">edit</a>
		&nbsp;]
	    </sup>
	    {% endif %}
	</h3>
	<div>{{ dataset.specifics }}</div>
	{% endif %}

	{% if dataset.experimentDesignInfo %}
        <h3>
	    <strong>Experiment Design</strong>
	    {% if dataset.editable %}
	    <sup>
		[&nbsp;
		<a href="/metadata/edit?type=dcat:Dataset&section=experimentDesignInfo&name={{ dataset.label}}">edit</a>
		&nbsp;]
	    </sup>
	    {% endif %}
	</h3>
        <div>{{ dataset.experimentDesignInfo|safe }}</div>
        {% endif %}

	{% if dataset.caseInfo %}
        <h3>
	    <strong>About the Cases Used to Generate this Dataset:</strong>
	    {% if dataset.editable %}
	    <sup>
		[&nbsp;
		<a href="/metadata/edit?type=dcat:Dataset&section=caseInfo&name={{ dataset.label}}">edit</a>
		&nbsp;]
	    </sup>
	    {% endif %}
	</h3>
        <div>{{ dataset.caseInfo|safe }}</div>
        {% endif %}

	{% if dataset.tissue and dataset.tissueInfo %}
        <h3>
	    <strong>About the Tissue
	    {%if dataset.tissue and dataset.tissue.label  %}({{ dataset.tissue.label }})
		{% endif %}Used to Generate this Dataset</strong>
	    {% if dataset.editable %}
	    <sup>
		[&nbsp;
		<a href="/metadata/edit?type=dcat:Dataset&section=tissueInfo&name={{ dataset.label}}">edit</a>
		&nbsp;]
	    </sup>
	    {% endif %}
	</h3>
        <div>{{ dataset.tissueInfo|safe }}</div>
        {% endif %}

        {% if dataset.platform and dataset.platformInfo %}
        <h3 title="{{ dataset.platform.label }}">
	    <strong>About the Array Platform</strong>
	    {% if dataset.editable %}
	    <sup>
		[&nbsp;
		<a href="/metadata/edit?type=dcat:Dataset&section=platformInfo&name={{ dataset.label}}">edit</a>
		&nbsp;]
	    </sup>
	    {% endif %}
	</h3>
        <div>{{ dataset.platformInfo|safe }}</div>
        {% endif %}

        {% if dataset.processingInfo %}
        <h3>
	    <strong>About Data Values and Data Processing</strong>
	    {% if dataset.editable %}
	    <sup>
		[&nbsp;
		<a href="/metadata/edit?type=dcat:Dataset&section=processingInfo&name={{ dataset.label}}">edit</a>
		&nbsp;]
	    </sup>
	    {% endif %}
	</h3>
        <div>{{ dataset.processingInfo|safe }}</div>
        {% endif %}

	{% if dataset.notes %}
        <h3>
	    <strong>Notes</strong>
	    {% if dataset.editable %}
	    <sup>
		[&nbsp;
		<a href="/metadata/edit?type=dcat:Dataset&section=notes&name={{ dataset.label}}">edit</a>
		&nbsp;]
	    </sup>
	</h3>
	{% endif %}
        <div>{{ dataset.notes|safe }}</div>
        {% endif %}

	{% if dataset.citation|trim %}
        <h3>
	    <strong>Citation</strong>
	    {% if dataset.editable %}
	    <sup>
		[&nbsp;
		<a href="/metadata/edit?type=dcat:Dataset&section=citation&name={{ dataset.label}}">edit</a>
		&nbsp;]
	    </sup>
	    {% endif %}
	</h3>
        <div>{{ dataset.citation|safe}}</div>
        {% endif %}

	{% if dataset.acknowledgement|trim %}
        <h3>
	    <strong>Acknowledgment</strong>
	    {% if dataset.editable %}
	    <sup>
		[&nbsp;
		<a href="/metadata/edit?type=dcat:Dataset&section=acknowledgement&name={{ dataset.label}}">edit</a>
		&nbsp;]
	    </sup>
	    {% endif %}
	</h3>
        <div>{{ dataset.acknowledgement|safe}}</div>
        {% endif %}

        {% if dataset.contributors %}
	<h3>
	    <strong>Contributors</strong>
	    {% if dataset.editable %}
	    <sup>
		[&nbsp;
		<a href="/metadata/edit?type=dcat:Dataset&section=contributors&name={{ dataset.label}}">edit</a>
		&nbsp;]
	    </sup>
	    {% endif %}
	</h3>
	<div>{{ dataset.contributors|safe }}</div>
	{% endif %}
    </div>
</div>

{% else %}
<div class="container dataset-search">
    <p class="lead">We appreciate your interest, but unfortunately, we don't have any additional information available for: <strong>{{ name }}</strong>.  If you have other inquiries or need assistance with something else, please don't hesitate to get in touch with us.
</div>

{% endif %}

{% endblock %}

{% block js %}

<script language="javascript" type="text/javascript" src="{{ url_for('js', filename='htmx.min.js') }}"></script>

{% endblock %}