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{% extends "index_page.html" %}
{% block css %}
<link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='DataTables/css/jquery.dataTables.css') }}" />
<link rel="stylesheet" type="text/css" href="/static/new/css/panelutil.css" />
<link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='d3-tip/d3-tip.css') }}" />
<link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='nvd3/nv.d3.min.css') }}">
<link rel="stylesheet" type="text/css" href="/static/new/css/trait_list.css" />
<link rel="stylesheet" type="text/css" href="/static/new/css/show_trait.css" />
<link rel="stylesheet" type="text/css" href="/static/new/css/corr_scatter_plot.css" />
{% endblock %}
{% block content %}
<div class="container-fluid">
<input type="hidden" name="cofactor1_vals"></input>
<input type="hidden" name="ranked_cofactor1_vals"></input>
<input type="hidden" name="cofactor2_vals"></input>
<input type="hidden" name="ranked_cofactor2_vals"></input>
<input type="hidden" name="cofactor3_vals"></input>
<input type="hidden" name="ranked_cofactor3_vals"></input>
<input type="hidden" name="selecting_which_cofactor"></input>
<h1>Correlation Scatterplot</h1>
<hr style="height: 1px; background-color: #A9A9A9;">
<table>
<tr>
<td style="vertical-align: middle;">Width <input class="chartupdatewh" id="width" type="text" value="800" style="width: 44px; height: 22px;"> px </td>
<td style="vertical-align: middle; padding-left: 5px;">Height <input class="chartupdatewh" id="height" type="text" value="700" style="width: 44px; height: 22px;"> px</td>
<td style="vertical-align: middle; padding-left: 5px;"><button type="button" class="btn btn-default" id="invert_axes">
Invert Axes
</button></td>
</tr>
</table>
<hr style="height: 1px; background-color: #A9A9A9;">
{% if collections_exist == "True" %}
<div>
<div style="margin-bottom: 10px;">
You can select up to three traits from a saved trait collection to use as cofactors in the scatterplots, with each trait corresponding to point color, size, or symbol.
For symbol, traits must have no more than 4 distinct values.
</div>
<div style="display: inline-block;">
<div id="cofactor1_button" style="display: inline-block;">
<button type="button" class="btn btn-default" id="select_cofactor1">
Select Cofactor 1
</button>
<select id="cofactor1_type">
<option value="color" selected>Color</option>
<option value="size">Size</option>
<option value="symbol">Symbol</option>
</select>
</div>
<div id="cofactor2_button" style="margin-left: 10px; display: none;">
<button type="button" class="btn btn-default" id="select_cofactor2">
Add a Second Cofactor?
</button>
<select id="cofactor2_type">
<option value="color">Color</option>
<option value="size" selected>Size</option>
<option value="symbol">Symbol</option>
</select>
</div>
<div id="cofactor3_button" style="margin-left: 10px; display: none;">
<button type="button" class="btn btn-default" id="select_cofactor3">
Add a Third Cofactor?
</button>
<select id="cofactor3_type">
<option value="color">Color</option>
<option value="size">Size</option>
<option value="symbol" selected>Symbol</option>
</select>
</div>
<div id="remove_cofactors_button" style="margin-left: 20px; display: inline-block;">
<button type="button" class="btn btn-danger" id="remove_cofactors">
Remove Cofactors
</button>
</div>
</div>
</div>
<div id="collections_holder_wrapper" style="display:none;">
<div id="collections_holder"></div>
</div>
<div id="cofactor_color_selector" style="margin-bottom: 10px; display:none;">
<hr>
<b>Cofactor Color Range:</b>
<input class="chartupdatedata" name="color2" type="hidden" id="cocolorfrom" value="#0000FF">
<button class="chartupdatedata jscolor {valueElement: 'cocolorfrom'}">Low</button>
<input class="chartupdatedata" name="color1" type="hidden" id="cocolorto" value="#FF0000">
<button class="chartupdatedata jscolor {valueElement: 'cocolorto'}">High</button>
<hr>
</div>
<div id="cofactor1_info_container" style="margin-left: 0px; display: none;">
<div>
<b>Cofactor 1</b>: <a id="cofactor1_trait_link" href="#"></a>
</div>
<div id="cofactor1_description"></div>
<hr>
</div>
<div id="cofactor2_info_container" style="margin-left: 0px; display: none;">
<div>
<b>Cofactor 2</b>: <a id="cofactor2_trait_link" href="#"></a>
</div>
<div id="cofactor2_description"></div>
<hr>
</div>
<div id="cofactor3_info_container" style="margin-left: 0px; display: none;">
<div>
<b>Cofactor 3</b>: <a id="cofactor3_trait_link" href="#"></a>
</div>
<div id="cofactor3_description"></div>
<hr>
</div>
{% else %}
<div style="margin-bottom: 10px;">No collections currently exist. Please create a collection first if you wish to include cofactors in the scatterplots.</div>
<hr>
{% endif %}
<ul class="nav nav-tabs">
<li {% if method == 'pearson' %}class="active"{% endif %}>
<a href="#tp1" data-toggle="tab">Pearson</a>
</li>
{% if effect_plot == false %}
<li {% if method == 'spearman' %}class="active"{% endif %}>
<a href="#tp2" data-toggle="tab">Spearman Rank</a>
</li>
{% endif %}
</ul>
<div class="tab-content" style="width: {% if effect_plot %}500{% else %}800{% endif %}px;">
<div class="tab-pane {% if method == 'pearson' %}active{% endif %}" id="tp1">
<br>
<div id="scatterplot2"></div>
<br>
<div style="width: {% if effect_plot %}500{% else %}800{% endif %}px; overflow: hidden;">
<div style="margin-left: 50px; min-width: 300px;">
{% if trait_1.dataset.type == "ProbeSet" %}
<div>
X axis:
<a href="{{url_for('show_trait_page', trait_id = trait_1.name, dataset = trait_1.dataset.name)}}">
{{trait_1.dataset.group.species + " " + trait_1.dataset.group.name + " " + trait_1.dataset.tissue + " " + trait_1.dataset.name + ": " + trait_1.name|string}}
</a>
</div>
<div>
[{{trait_1.symbol}} on {{trait_1.location_repr}} Mb]
{{trait_1.description_display}}
</div>
{% elif trait_1.dataset.type == "Publish" %}
<div>
X axis:
<a href="{{url_for('show_trait_page', trait_id = trait_1.name, dataset = trait_1.dataset.name)}}">
{{trait_1.dataset.group.species + " " + trait_1.dataset.group.name + " " + trait_1.dataset.name + ": " + trait_1.name|string}}
</a>
</div>
<div>
<a href="{{trait_1.pubmed_link}}">PubMed: {{trait_1.pubmed_text}}</a>
{{trait_1.description_display}}
</div>
{% elif trait_1.dataset.type == "Geno" %}
<div>
X axis:
<a href="{{url_for('show_trait_page', trait_id = trait_1.name, dataset = trait_1.dataset.name)}}">
{{trait_1.dataset.group.species + " " + trait_1.dataset.group.name + " " + trait_1.dataset.name + ": " + trait_1.name|string}}
</a>
</div>
<div>
Location: {{trait_1.location_repr}} Mb
</div>
{% endif %}
<br/>
{% if trait_2.dataset.type == "ProbeSet" %}
<div>
Y axis:
<a href="{{url_for('show_trait_page', trait_id = trait_2.name, dataset = trait_2.dataset.name)}}">
{{trait_2.dataset.group.species + " " + trait_2.dataset.group.name + " " + trait_2.dataset.tissue + " " + trait_2.dataset.name + ": " + trait_2.name|string}}
</a>
</div>
<div>
[{{trait_2.symbol}} on {{trait_2.location_repr}} Mb]
{{trait_2.description_display}}
</div>
{% elif trait_2.dataset.type == "Publish" %}
<div>
Y axis:
<a href="{{url_for('show_trait_page', trait_id = trait_2.name, dataset = trait_2.dataset.name)}}">
{{trait_2.dataset.group.species + " " + trait_2.dataset.group.name + " " + trait_2.dataset.name + ": " + trait_2.name|string}}
</a>
</div>
<div>
<a href="{{trait_2.pubmed_link}}">PubMed: {{trait_2.pubmed_text}}</a>
{{trait_2.description_display}}
</div>
{% elif trait_2.dataset.type == "Geno" %}
<div>
Y axis:
<a href="{{url_for('show_trait_page', trait_id = trait_2.name, dataset = trait_2.dataset.name)}}">
{{trait_2.dataset.group.species + " " + trait_2.dataset.group.name + " " + trait_2.dataset.name + ": " + trait_2.name|string}}
</a>
</div>
<div>
Location: {{trait_2.location_repr}} Mb
</div>
{% endif %}
</div>
<div style="float: left; margin-top:30px;">
<table class="table table-hover table-striped table-bordered" style="width: 80%; margin-left: 60px; text-align: right;">
<thead>
<tr><th style="text-align: right;">Statistic</th><th style="text-align: right;">Value</th></tr>
</thead>
<tbody>
<tr>
<td>Number</td>
<td>{{jsdata.num_overlap}}</td>
</tr>
<tr>
<td>Slope</td>
<td>{{ jsdata.slope_string }}</td>
</tr>
<tr>
<td>Intercept</td>
<td>{{'%0.3f' % jsdata.intercept}}</td>
</tr>
<tr>
<td>r value</td>
<td>{{'%0.3f' % jsdata.r_value}}</td>
</tr>
<tr>
<td>P value</td>
<td>{% if jsdata.p_value < 0.001 %}{{'%0.3e' % jsdata.p_value}}{% else %}{{'%0.3f' % jsdata.p_value}}{% endif %}</td>
</tr>
<tr>
<td style="text-align: left;" colspan="2">
Regression Line
<br>
y = {{ jsdata.slope_string }} * x {% if jsdata.intercept < 0 %}- {{'%0.3f' % (jsdata.intercept * -1)}}{% else %}+ {{'%0.3f' % jsdata.intercept}}{% endif %}
</td>
</tr>
</tbody>
</table>
</div>
</div>
</div>
{% if effect_plot == false %}
<div class="tab-pane {% if method == 'spearman' %}active{% endif %}" id="tp2">
<br>
<div id="srscatterplot2"></div>
<br>
<div class="row" style="width: 800px; overflow: hidden;">
<div style="margin-left: 50px; min-width: 300px;">
{% if trait_1.dataset.type == "ProbeSet" %}
<div>
X axis:
<a href="{{url_for('show_trait_page', trait_id = trait_1.name, dataset = trait_1.dataset.name)}}">
{{trait_1.dataset.group.species + " " + trait_1.dataset.group.name + " " + trait_1.dataset.tissue + " " + trait_1.dataset.name + ": " + trait_1.name|string}}
</a>
</div>
<div>
[{{trait_1.symbol}} on {{trait_1.location_repr}} Mb]
{{trait_1.description_display}}
</div>
{% elif trait_1.dataset.type == "Publish" %}
<div>
X axis:
<a href="{{url_for('show_trait_page', trait_id = trait_1.name, dataset = trait_1.dataset.name)}}">
{{trait_1.dataset.group.species + " " + trait_1.dataset.group.name + " " + trait_1.dataset.name + ": " + trait_1.name|string}}
</a>
</div>
<div>
<a href="{{trait_1.pubmed_link}}">PubMed: {{trait_1.pubmed_text}}</a>
{{trait_1.description_display}}
</div>
{% endif %}
<br/>
{% if trait_2.dataset.type == "ProbeSet" %}
<div>
Y axis:
<a href="{{url_for('show_trait_page', trait_id = trait_2.name, dataset = trait_2.dataset.name)}}">
{{trait_2.dataset.group.species + " " + trait_2.dataset.group.name + " " + trait_2.dataset.tissue + " " + trait_2.dataset.name + ": " + trait_2.name|string}}
</a>
</div>
<div>
[{{trait_2.symbol}} on {{trait_2.location_repr}} Mb]
{{trait_2.description_display}}
</div>
{% elif trait_2.dataset.type == "Publish" %}
<div>
Y axis:
<a href="{{url_for('show_trait_page', trait_id = trait_2.name, dataset = trait_2.dataset.name)}}">
{{trait_2.dataset.group.species + " " + trait_2.dataset.group.name + " " + trait_2.dataset.name + ": " + trait_2.name|string}}
</a>
</div>
<div>
<a href="{{trait_2.pubmed_link}}">PubMed: {{trait_2.pubmed_text}}</a>
{{trait_2.description_display}}
</div>
{% endif %}
</div>
<div style="float: left; margin-top: 30px;">
<table class="table table-hover table-striped table-bordered" style="width: 80%; margin-left: 60px; text-align: right;">
<thead>
<tr><th style="text-align: right;">Statistic</th><th style="text-align: right;">Value</th></tr>
</thead>
<tbody>
<tr>
<td>Number</td>
<td>{{jsdata.num_overlap}}</td>
</tr>
<tr>
<td>Slope</td>
<td>{{ jsdata.srslope_string }}</td>
</tr>
<tr>
<td>Intercept</td>
<td>{{'%0.3f' % jsdata.srintercept}}</td>
</tr>
<tr>
<td>r value</td>
<td>{{'%0.3f' % jsdata.srr_value}}</td>
</tr>
<tr>
<td>P value</td>
<td>{% if jsdata.srp_value < 0.001 %}{{'%0.3e' % jsdata.srp_value}}{% else %}{{'%0.3f' % jsdata.srp_value}}{% endif %}</td>
</tr>
<tr>
<td style="text-align: left;" colspan="2">
Regression Line
<br>
y = {{ jsdata.srslope_string }} * x {% if jsdata.srintercept < 0 %}- {{'%0.3f' % (jsdata.srintercept * -1)}}{% else %}+ {{'%0.3f' % jsdata.srintercept}}{% endif %}
</td>
</tr>
</tbody>
</table>
</div>
</div>
</div>
{% endif %}
</div>
{% endblock %}
{% block js %}
<script>
js_data = {{ js_data | safe }};
</script>
<script language="javascript" type="text/javascript" src="{{ url_for('js', filename='d3js/d3.min.js') }}"></script>
<script language="javascript" type="text/javascript" src="{{ url_for('js', filename='js_alt/underscore.min.js') }}"></script>
<script language="javascript" type="text/javascript" src="{{ url_for('js', filename='d3-tip/d3-tip.js') }}"></script>
<script language="javascript" type="text/javascript" src="{{ url_for('js', filename='jscolor/jscolor.js') }}"></script>
<script language="javascript" type="text/javascript" src="/static/new/javascript/panelutil.js"></script>
<script language="javascript" type="text/javascript" src="{{ url_for('js', filename='DataTables/js/jquery.dataTables.js') }}"></script>
<script language="javascript" type="text/javascript" src="{{ url_for('js', filename='DataTablesExtensions/plugins/sorting/natural.js') }}"></script>
<!--<script language="javascript" type="text/javascript" src="/static/new/javascript/get_traits_from_collection.js"></script>-->
<script type="text/javascript" src="{{ url_for('js', filename='plotly/plotly.min.js') }}"></script>
<script language="javascript" type="text/javascript" src="/static/new/javascript/draw_corr_scatterplot.js"></script>
{% endblock %}
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