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"""module contains for processing gn3 wgcna data"""
from unittest import TestCase
from gn2.wqflask.wgcna.gn3_wgcna import process_wgcna_data
class DataProcessingTests(TestCase):
"""class contains data processing tests"""
def test_data_processing(self):
"""test for parsing data for datatable"""
output = {
"input": {
"sample_names": ["BXD1", "BXD2", "BXD3", "BXD4", "BXD5", "BXD6"],
},
"output": {
"ModEigens": {
"MEturquoise": [
0.0646677768085351,
0.137200224277058,
0.63451113720732,
-0.544002665501479,
-0.489487590361863,
0.197111117570427
],
"MEgrey": [
0.213,
0.214,
0.3141,
-0.545,
-0.423,
0.156,
]
}}}
row_data = [['BXD1', 0.065, 0.213],
['BXD2', 0.137, 0.214],
['BXD3', 0.635, 0.314],
['BXD4', -0.544, -0.545],
['BXD5', -0.489, -0.423],
['BXD6', 0.197, 0.156]]
expected_results = {
"col_names": ["sample_names", "MEturquoise", "MEgrey"],
"mod_dataset": row_data
}
self.assertEqual(process_wgcna_data(output), expected_results)
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