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#+TITLE: Testing GN2
* Table of Contents :TOC:
- [[#introduction][Introduction]]
- [[#run-tests][Run tests]]
- [[#setup][Setup]]
- [[#running][Running]]
* Introduction
For integration testing, we currently use [[https://github.com/genenetwork/genenetwork2/tree/testing/test/requests][Mechanica Rob]] against the
small [[https://github.com/genenetwork/genenetwork2/blob/testing/doc/database.org][database]]; a setup we call Mechanical Rob because it emulates
someone clicking through the website and checking results.
These scripts invoke calls to a running webserver and test the response.
If a page changes or breaks, tests will fail. In principle, Mechanical
Rob runs before code merges get committed to the main server.
For unit tests, we use python's =unittest= framework. Coverage reports
get generated using [[https://coverage.readthedocs.io/en/coverage-5.2.1/][coverage.py]] which you could also use to run
unit tests. When adding new functionality, it is advisable to add
unit tests.
* Run tests
** Setup
Everything required for testing is already package with guix:
: ./pre-ins-env guix package -i genenetwork2 -p ~/opt/genenetwork2
** Running
Run the tests from the root of the genenetwork2 source tree as. Ensure
that Redis and Mariadb are running.
To run Mechanical Rob:
: time env GN2_PROFILE=~/opt/genenetwork2 TMPDIR=~/tmp SERVER_PORT=5004 GENENETWORK_FILES=/gnu/data/gn2_data/ ./bin/genenetwork2 ./gn2/default_settings.py -c ~/projects/genenetwork2/test/requests/test-website.py -a http://localhost:5004
Use these aliases for the following examples.
#+begin_src sh
alias runpython="env GN2_PROFILE=~/opt/gn-latest TMPDIR=/tmp SERVER_PORT=5004 GENENETWORK_FILES=/gnu/data/gn2_data/ ./bin/genenetwork2"
alias runcmd="time env GN2_PROFILE=~/opt/gn-latest TMPDIR=//tmp SERVER_PORT=5004 GENENETWORK_FILES=/gnu/data/gn2_data/ ./bin/genenetwork2 ./gn2/default_settings.py -cli"
#+end_src
You could use them in your =.bashrc= or =.zshrc= file.
To run unit tests:
: runpython -m unittest discover -v
Or alternatively using the coverage tool:
: runcmd coverage run -m unittest discover -v
To generate a html coverage report in =wqflask/coverage_html_report/=
: runcmd coverage html
To output the report to =STDOUT=:
: runcmd coverage report
All the configs for running the coverage tool are in
=wqflask/.coveragerc=
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