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* Setting up GUIX profile for GN
First create a guix profile with the latest packages:
: ~/opt/guix/bin/guix pull
This will create a profile with the latest packages under`~/.config/guix/current`
Now you have the latest guix. Check: `$HOME/.config/guix/current/bin/guix --version`
At this point, it's worth mentioning that installing
python3-genenetwork using `$HOME/.config/guix/current/bin/guix` should
work; but let's use the dev version(since that may come handy in
time), and it's a nice thing to know.
Next, we ensure that the appropriate GUILE<sub>PATHS</sub> are set:
: export GUILE_LOAD_PATH=$HOME/.config/guix/current/share/guile/site/3.0/
: export GUILE_LOAD_COMPILED_PATH=$HOME/.config/guix/current/lib/guile/3.0/site-ccache/
Get into the container:
: $HOME/.config/guix/current/bin/guix environment -C guix --ad-hoc bash gcc-toolchain
: ./bootstrap
: ./configure --localstatedir=/var --sysconfdir=/etc
Check that everything works:
: make check
Clean up and build:
: make clean-go
: make -j 4
: exit
Install Python3 (substitute paths when necessary):
: env GUIX_PACKAGE_PATH='/home/zas1024/guix-bioinformatics:/home/zas1024/guix-past/modules' $HOME/.config/guix/current/bin/guix install python3-genenetwork2 -p ~/opt/python3-genenetwork2 --substitute-urls="http://guix.genenetwork.org https://berlin.guixsd.org https://ci.guix.gnu.org https://mirror.hydra.gnu.org"
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