genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Expand)	Author
2019-04-02	Fixed issue where non-GEMMA mapping would throw an error because it would sti...	zsloan
2019-03-29	Fixed issue that caused PCA results to be different in GN2 than in GN1; one r...	zsloan
2019-03-29	Updated UCSC Verify link-out from hg19 to hg38 for humans	zsloan
2019-03-28	Added link to GN2 document github wiki to index page	zsloan
2019-03-28	Possibly fixed issue where PCA traits didn't calculate for certain sets of tr...	zsloan
2019-03-27	Changed gen_select_dataset.py to be able to show multiple datasets under the ...	zsloan
2019-03-25	- Added SVG export to basic stats figures	zsloan
2019-03-19	Added option to add PCA traits to collection from correlation matrix page	zsloan
2019-03-18	- Added PCA traits to correlation matrix. You can't change their names yet or...	zsloan
2019-03-13	Zooming into chromosome or remapping with GEMMA is now very fast, since it st...	zsloan
2019-03-11	Changed header style, because the jumbotrons previously used didn't look that...	zsloan
2019-03-11	Added default empty collection when user is logged in and attempts to add tra...	zsloan
2019-03-07	Changed the way covariates are displayed when selected for mapping	zsloan
2019-03-07	Made violin plots for different groups/sample-sets different colors and match...	zsloan
2019-03-07	Fixed issue where pressing enter in the search page text area would go to a n...	zsloan
2019-03-07	Fixed issue where correlation results containing NaN results sorted incorrectly	zsloan
2019-03-06	Cofactor option for correlation scatterplot was broken; it should be fixed now	zsloan
2019-03-05	Made R/qtl metho/model names better and added some javascript to disable wron...	zsloan
2019-03-04	Fixed excel export to show all columns	zsloan
2019-03-04	- Added z-score transformation	zsloan
2019-03-01	Added alternating point colors for manhattan plots	zsloan
2019-03-01	Changed loading page to work for any feature, instead of having to make a sep...	zsloan
2019-03-01	Added more information to the top-right corner of the mapping results	zsloan
2019-02-27	Added loading page for correlation	zsloan
2019-02-22	Fixed some appearance issues with several tables	zsloan
2019-02-18	Updated installation instructions and SERVER_PORT for single flask server	Pjotr Prins
2019-02-15	Fixed error caused by change to N values in database (now takes strings inste...	zsloan
2019-02-14	Fixed minor bug with updating stats figures when sample values changed	zsloan
2019-02-14	Changed trait page tables to load JSON	zsloan
2019-02-13	Removed pylmm references and related functions	Pjotr Prins
2019-02-13	Remove all coffee files	Pjotr Prins
2019-02-12	Added GeneWeaver linkout	zsloan
2019-02-05	Removed redundant header text from search page to save vertical space	zsloan
2019-02-05	Fixed issue with getting marker info that affected heatmap and possibly other...	zsloan
2019-02-04	Changed the way the table is drawn for the search pages so that it can show w...	zsloan
2019-01-22	Fixed issue where Haplotype Analyst in mapping results would always show resu...	zsloan
2019-01-17	Redid gene global search to take JSON data input instead of converting an HTM...	zsloan
2019-01-16	Pushing SNP browser updates	zsloan
2019-01-11	Got InDel working for Variant Browser	zsloan
2018-12-21	Fixed collections so they can be very large (1000+ traits)	zsloan
2018-12-05	Fixed Verify link	zsloan
2018-12-05	Fixed issue where SNP track for mapping did not appear correctly	zsloan
2018-11-20	Added option to select chromosome from trait page when mapping	zsloan
2018-11-13	Changed trait sample table appearance to be more compact	zsloan
2018-11-12	Added change to remove qtlreaper use from correlation and prevent the inconsi...	zsloan
2018-11-05	Fixed quantile normalization issue	zsloan
2018-11-04	Fixed one more thing	zsloan
2018-11-04	Quick fix to issue where GEMMA wouldn't be run simultaneously on traits from ...	zsloan
2018-11-02	Minor fix since sometimes number of samples with values wasn't counted correctly	zsloan
2018-11-02	Committing some changes that get non-LOCO GEMMA mapping working without using...	zsloan