| Age | Commit message (Expand) | Author |
|---|
| 2018-04-02 | Fixed link for staging server | zsloan |
| 2018-04-02 | Fixed error that caused server to not start with new user code | zsloan |
| 2018-04-02 | Merge pull request #301 from pjotrp/testing-rm-bloat...Testing rm bloat (jqplot and ckeditor) | zsloan |
| 2018-04-02 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing | zsloan |
| 2018-04-02 | Just added link to staging branch to header bar | zsloan |
| 2018-04-02 | Config files are store in https://github.com/genenetwork/gn-deploy-servers repo | Pjotr Prins |
| 2018-04-02 | Remove file | Pjotr Prins |
| 2018-04-02 | User manager no longer uses SQL | Pjotr Prins |
| 2018-04-02 | js: rm ckeditor - need to replace | Pjotr Prins |
| 2018-04-02 | js: removed jqplot | Pjotr Prins |
| 2018-04-02 | user_session add output | Pjotr Prins |
| 2018-03-30 | Collections: use logging instead of print (@zsloan) | Pjotr Prins |
| 2018-03-30 | Fixes related to E-mail forgotten password | Pjotr Prins |
| 2018-03-30 | Fixes related to E-mail forgotten password | Pjotr Prins |
| 2018-03-30 | Fixes forgotten password error, see #257 | Pjotr Prins |
| 2018-03-29 | Can now add markers to collection from mapping results page | zsloan |
| 2018-03-29 | Resolved conflict in views.py | zsloan |
| 2018-03-29 | Fixed box plots and got them to update with changed sample data...Removed fast correlation option because it doesn't work well with gunicorn
Changed the type of logger from error to debug when logging which page is being visited in views.py
| zsloan |
| 2018-03-29 | Fixed gsearch blowout https://github.com/genenetwork/genenetwork2/issues/295 | Pjotr Prins |
| 2018-03-29 | Type checking in its own file | Pjotr Prins |
| 2018-03-29 | Search: improved regex and some debug info | Pjotr Prins |
| 2018-03-29 | Disable caching of search errors | Pjotr Prins |
| 2018-03-29 | Checking search error terms with regex | Pjotr Prins |
| 2018-03-29 | Illegal search term corrected treatment and no longer shows as error in logs | Pjotr Prins |
| 2018-03-26 | Remove flask_security module - not used | Pjotr Prins |
| 2018-03-26 | Use logger.info instead of logger.debug, fixes https://github.com/genenetwork... | Pjotr Prins |
| 2018-03-26 | Skip automatic use of EXPLAIN_TEMPLATE_LOADING. | Pjotr Prins |
| 2018-03-26 | Refactor startup config for gunicorn and werkzeug | Pjotr Prins |
| 2018-03-26 | Fix | Pjotr Prins |
| 2018-03-26 | Authentication: some mods around defaults | Pjotr Prins |
| 2018-03-26 | - Disabled PYTHONPATH injection - fix Guix instead, see https://github.com/pj......- Renamed WQFLASK_SETTINGS to GN2_SETTINGS
| Pjotr Prins |
| 2018-03-26 | Check that key exists before using it...* Ensure the key exists in the json object/dictionary, before trying to
use it to retrieve a value.
| Muriithi Frederick Muriuki |
| 2018-03-26 | Provide connections to elasticsearch...* Provide connections to elasticsearch at various points in the code.
These oversight was caught while running tests.
| Muriithi Frederick Muriuki |
| 2018-03-26 | Fix assumption of existing collection...* When logging in, if a user selects "Import existing collections", the
system would throw an exception, since Redis would return a NoneType,
which would then be accessed by json.loads(), which doesn't seem to
know how to process that.
This fixes that, by providing a string representing an empty json
array ("[]"), in place of the NoneType.
| Muriithi Frederick Muriuki |
| 2018-03-26 | Add more login tests. | Muriithi Frederick Muriuki |
| 2018-03-26 | Added unittest example | Pjotr Prins |
| 2018-03-26 | Fixing authentication stuff so it uses parameters properly. Also no PYTHONPAT......it is now in the Guix build.
| Pjotr Prins |
| 2018-03-26 | Add tests for Registration process. | Muriithi Frederick Muriuki |
| 2018-03-26 | Update module to make it more testable...* Update functions to make them more testable.
* Update code using updated functions.
| Muriithi Frederick Muriuki |
| 2018-03-26 | Check elasticsearch at point of use...* Instead of checking for the state of elasticsearch at startup, check
the state at the moment the user requests a feature that depends on
elasticsearch.
This reduces the chances that the user is dropped onto an exception
page when elasticsearch server goes down.
| Muriithi Frederick Muriuki |
| 2018-03-26 | Add check for elasticsearch...* Add some extra checks to ensure that elasticsearch is running before
presenting the UI to the user.
| Muriithi Frederick Muriuki |
| 2018-03-26 | Add code to allow user to change password...* After the email is sent to the user, there is need to provide a way
for the user to actually change their password, and have the results
saved.
| Muriithi Frederick Muriuki |
| 2018-03-26 | Refactor common items to more generic methods....* Refactor code that can be used in more than one place to a more
generic method/function that's called by other methods
| Muriithi Frederick Muriuki |
| 2018-03-26 | Send emails for forgotten passwords...* Update the code so that it sends out emails for the "forgot password"
feature.
| Muriithi Frederick Muriuki |
| 2018-03-26 | Add SMTP configuration variables...* Add configuration variables to enable the system connect to the
configured SMTP server to send out emails.
| Muriithi Frederick Muriuki |
| 2018-03-26 | Fail safely if elasticsearch is down or unconfigured...* If elasticsearch server is down, or the configuration variables are
not provided at startup or in a configuration file, then do not allow
the system to simply crash, but instead, inform the user that they
cannot use the services that depend on elasticsearch to be running.
| Muriithi Frederick Muriuki |
| 2018-03-26 | Set to None if no value provided...* Add a method to set the configuration variables to None if the
configuration values are not provided at startup or in the
configuration files.
The system already checks for these values, and if they are absent, it
simply fails to display the OAuth service as available for use to
login.
| Muriithi Frederick Muriuki |
| 2018-03-26 | Use elasticsearch rather than mysql for local accounts...* Register local accounts onto elasticsearch rather than mysql.
* Login from the accounts on elasticsearch
* Harmonise local and oauth2 logins to use the same code.
| Muriithi Frederick Muriuki |
| 2018-03-26 | Add OAuth2 login code for ORCID...* Add code to handle the login via ORCID
| Muriithi Frederick Muriuki |
| 2018-03-26 | Update configurations...* Have the authorisation URLs build up from the client id and client
secret values.
| Muriithi Frederick Muriuki |
