| Age | Commit message (Expand) | Author |
|---|
| 2020-09-15 | Fix failing tests...* wqflask/tests/base/test_data_set.py: Update failing tests introduced
by the change in 301bdd2f4.
| BonfaceKilz |
| 2020-09-08 | Changed the Add button color for all the different pages that use it...* wqflask/wqflask/templates/collections/view.html - changed Add button
color
* wqflask/wqflask/templates/correlation_matrix.html - changed Add button
color
* wqflask/wqflask/templates/correlation_page.html - changed Add button
color
* wqflask/wqflask/templates/mapping_results.html - changed Add button
color
* wqflask/wqflask/templates/search_result_page.html - changed Add button
color
| zsloan |
| 2020-09-08 | Search code now checks if there are more than 50,000 results before...running the code that queries the DB for max LRS locus information
(which is what takes the most time to run) and sets a variable that
indicates to the template (search_results.html) that it shouldn't show
the results
* wqflask/wqflask/search_results.py - Check number of results from base
query in order to prevent certain searches from running too long
| zsloan |
| 2020-09-08 | Changed regular and global search results table to use the new sort...method that always places NAs at bottom, changed the Add to Collection
button's color, and added something to the regular search page template
to display alternative text if there are more than 50000 results
* wqflask/wqflask/templates/gsearch_gene.html - Added natural-minus-na
sort to certain columns and changed Add button color
* wqflask/wqflask/templates/gsearch_pheno.html - Added natural-minus-na
sort to certain columns and changed Add button color
* wqflask/wqflask/templates/search_result_page.html - Added
natural-minus-na sort to certain columns, changed Add button color, and
added template logic that shows alternative text if there are more than
50,000 results
| zsloan |
| 2020-09-08 | Added a sort function (derived from the natural sort import) that always...places N/As at the bottom regardless of search direction
* wqflask/wqflask/static/new/javascript/search_results.js - created
"natural-minus-na" sort
| zsloan |
| 2020-09-04 | Update how static js/ css files are fetched...* wqflask/wqflask/views.p:(css, js) Add "css" router decorator. Also, if
"js_alt" is in path, fetch the file from "GUIX_PROFILE/share/javascript" instead
of the default directory: "GUIX_PROFILE/share/genenetwork2/javascript"
See: <https://github.com/genenetwork/genenetwork2/issues/436>
| BonfaceKilz |
| 2020-09-01 | There was a missing quote in one of the javascript imports added by the...PR changing them to get fetched from GUIX; I need to check and see if
there are other situations like this
* wqflask/wqflask/templates/mapping_results.html - Added missing quote
| zsloan |
| 2020-09-01 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing | zsloan |
| 2020-09-01 | Fixed indent issue that could cause error when showing the haplotype...analyst in the mapping chromosome view
* wqflask/wqflask/marker_regression/display_mapping_results.py -
Indented a bit of code that was wrongly indented in such a way that the
variable "ind" wasn't set if "plotbxd" is 0
| zsloan |
| 2020-09-01 | Use "md5.min.js" from guix | BonfaceKilz |
| 2020-09-01 | Remove commented out script tags that references CDNs | BonfaceKilz |
| 2020-09-01 | Replace CDNs with packages from guix | BonfaceKilz |
| 2020-09-01 | Add missing apostrophe in url_for args | BonfaceKilz |
| 2020-08-31 | Merge pull request #431 from BonfaceKilz/Build/add-d3-tip...Use d3-tip from guix | BonfaceKilz |
| 2020-08-31 | Fixed text on not_authenticated to use proper grammar...* wqflask/wqflask/templates/new_security/not_authenticated.html -
Changed "this" to "these" since "data" is plural
| zsloan |
| 2020-08-31 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing | zsloan |
| 2020-08-31 | Fixed issue that was causing updating resource default privileges to not...work
* wqflask/utility/redis_tools.py - There was an issue where resources
wouldn't be updated if they already existed. This is because the code
didn't yet account for the "update" tag (that is meant to give the
option of preventing updating resources when running the script to enter
all resources into Redis). I changed the logic to add a resource if
"update" is True or the resource doesn't already exist (so it won't if
update is False and the resource exists).
| zsloan |
| 2020-08-31 | Use d3-tip from guix | BonfaceKilz |
| 2020-08-31 | Use chroma from guix...* wqflask/wqflask/templates/correlation_matrix.html: Fetch chroma from guix
profile
| BonfaceKilz |
| 2020-08-31 | Merge pull request #428 from BonfaceKilz/chore/delete-datatables-extensions-f......Delete dataTables and it's extensions from git | BonfaceKilz |
| 2020-08-29 | Fixed issue where exporting traits would throw an error if a dataset's...group didn't have an InbredSetCode set in the DB
* wqflask/utility/authentication_tools.py - Changed get_group_code to
return an empty string instead of None if InbredSetCode doesn't exist
for a dataset group
* wqflask/wqflask/views.py - Changed zipped export filename to
"export_(datetime)" instead of "collection_(datetime)" since this export
can occur from both the collection page and the global search page
| zsloan |
| 2020-08-29 | Fixed issue with exporting traits from multiple different groups from...the collection page (the filename wasn't being set)
* wqflask/wqflask/views.py - Set filename to "collection_(datetime)" in
export_traits_csv because it wasn't being set before
| zsloan |
| 2020-08-28 | Delete dataTables and it's extensions from git...* wqflask/wqflask/static/new/packages/DataTables/: Delete folder.
| BonfaceKilz |
| 2020-08-27 | Added logic that creates a user account if an e-mail is added to a group...that isn't already associated with a GN2 account and sends the user an
e-mail; still need to test
* wqflask/wqflask/group_manager.py - Added logic sending an invitation
e-mail if user_details aren't found for any of the e-mails provided when
adding users to a group
| zsloan |
| 2020-08-27 | Added function for sending an invitation e-mail...* wqflask/wqflask/user_login.py - Added send_invitation_email function,
which does what it says
| zsloan |
| 2020-08-27 | Added manager_user.html because it was missing from git | zsloan |
| 2020-08-25 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing | zsloan |
| 2020-08-25 | Fixed issue in DatasetType that caused an error when trying to load new...datasets
* wqflask/base/data_set.py - Added fetchone() to g.db.execute() which is
what was causing the error
| zsloan |
| 2020-08-25 | Merge pull request #427 from BonfaceKilz/Build/add-scientific-js-datatables-p......Build/add scientific js datatables plugin | zsloan |
| 2020-08-25 | This should fix an issue where the new qtlreaper wouldn't work properlty...with genotypes that only have cM positions
* wqflask/wqflask/marker_regression/qtlreaper_mapping.py -
parse_reaper_output is changed to check if cM and Mb exist in output
when creating marker obs
* wqflask/wqflask/marker_regression/run_mapping.py - Changed
export_mapping_results to properly deal with all combinations of cM and
Mb positions (both and either/or)
| zsloan |
| 2020-08-25 | Merge pull request #425 from BonfaceKilz/refactor/extract-htmlgen-methods-to-......Refactor/extract htmlgen methods to wrapper class | zsloan |
| 2020-08-25 | Use scientific.js dataTables extension plugin from guix | BonfaceKilz |
| 2020-08-24 | Use natural.js dataTables extension plugin from guix | BonfaceKilz |
| 2020-08-24 | Remove non-keyword args...* wqflask/wqflask/marker_regression/display_mapping_results.py
(HtmlGenWrapper)[create_image_tag]: Remove "src" and "alt" as function
parameters.
| BonfaceKilz |
| 2020-08-24 | Replace "HtmlGen" method calls with those from "HtmlGenWrapper"...* wqflask/wqflask/marker_regression/display_mapping_results.py
(DisplayMappingResults): Replace direct calls to HtmlGen with methods from
the constructed wrapper class "HtmlGenWrapper".
| BonfaceKilz |
| 2020-08-24 | Add new wrapper class for HtmlGen method...* wqflask/wqflask/marker_regression/display_mapping_results.py: Add new class
| BonfaceKilz |
| 2020-08-24 | Add tests for the HtmlGenWrapper class...* wqflask/tests/wqflask/marker_regression/test_display_mapping_results.py: Add
new tests
| BonfaceKilz |
| 2020-08-24 | Fix some pylint errors...* wqflask/wqflask/marker_regression/display_mapping_results.py: Remove unused
imports and add fix some pylint errors
| BonfaceKilz |
| 2020-08-24 | Remove unused imports...* wqflask/utility/Plot.py: Remove unused imports like "numarray". "numarray" is
does not have py3 support so it's important to remove references to it.
| BonfaceKilz |
| 2020-08-24 | Rename file...* wqflask/tests/wqflask/marker_regression/test_display_mapping_results.py:
Rename test_display_marking_results.py to test_display_mapping_results.py
| BonfaceKilz |
| 2020-08-24 | Fix failing test...* wqflask/tests/wqflask/api/test_gen_menu.py: Update assertion. Result data
introduced in 092212df
Signed-off-by: BonfaceKilz <bonfacemunyoki@gmail.com>
| BonfaceKilz |
| 2020-08-24 | Fixed issue where im_drawer wasn't being set in drawHaplotypeBand...* wqflask/wqflask/marker_regression/display_mapping_results.py - defined
im_drawer in drawHaplotypeBand to fix errror and removed an unused
import
| zsloan |
| 2020-08-24 | The function draw_rotated_text_ was writing an image to /tmp, which GN2...user apparently doesn't have access to, so I replaced it with a link to
the dynamically set TEMPDIR
* wqflask/utility/pillow_utils.py - Replaced "/tmp/" in image location
with TEMPDIR
| zsloan |
| 2020-08-22 | Set min-width for search result table, since the description column...often looks weird if it gets below a certain width
* wqflask/wqflask/templates/search_result_page.html - Set min-width of
table container div to 1500px since that seems to be a reasonable width
that prevents the description column from getting too narrow
| zsloan |
| 2020-08-20 | Changed Molecular Trait Datasets to Molecular Traits in the Type...drop-down on the home page
* wqflask/wqflask/api_gen_menu.py - Changed where Molecular Trait
Datasets was hardcoded to Molecular Traits
| zsloan |
| 2020-08-20 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing | zsloan |
| 2020-08-20 | Use dataTables.colResize.js and naturalSort from guix | BonfaceKilz |
| 2020-08-20 | Use buttons.colVis.min.js from guix | BonfaceKilz |
| 2020-08-20 | Use buttons.bootstrap.css from guix | BonfaceKilz |
| 2020-08-20 | Use scroller.dataTables.min.css from guix | BonfaceKilz |
