| Age | Commit message (Expand) | Author |
|---|---|---|
| 2014-01-30 | Most of the work is done towards running lmm.py from the command line...and storing the results in redis | Zachary Sloan |
| 2014-01-29 | Limited number of markers in marker regression result table to...those with a lod score > 2 Did some work towards adding the colored backgrounds to chromosome areas in the manhattan plot Changed the last two chromosomes for human manhattan plots to X and X/Y Started work on writing a script that can independently run the pyLMM code and store the results in redis | Zachary Sloan |
| 2014-01-24 | Added natural sort to sort the index column for the sample data in...the trait page Hid the Quick Search on the index page until it is working well. Started writing a file to run the pyLMM code in the background to avoid memory issues/timing out | Zachary Sloan |
| 2014-01-23 | Histogram is working...Fixed some bug with generating the manhattan plot for the HLC data set | Zachary Sloan |
| 2014-01-03 | Wrote some code for the histogram figure...Changed some code in dataset to try and track down the issue with Amelie's file | Zachary Sloan |
| 2013-12-30 | Fixed issue where box plots initially appeared below the bar chart...instead of in the second tab In the process of trying to fix the genofile to json parser so we can map Amelie's rat data In the process of having the color of bars in the bar chart "follow" them when they are resorted. | Zachary Sloan |
| 2013-12-18 | Merge /home/zas1024/gene | Sam |
| 2013-12-18 | Fixed issue where "Type" and "Dataset" had no default values for...the home page drop-downs | Zachary Sloan |
| 2013-12-17 | Added the option to choose which method to use for the interval...mapping function (pyLMM or qtl reaper) | Zachary Sloan |
| 2013-12-12 | Put the code that rebuilds the bar chart into a function...Still need to fix issue where attribute colors don't stay with their associated samples/strains | Zachary Sloan |
| 2013-12-11 | Got sort by name/value buttons working and committing before trying...to put some of the d3 code into a function | Zachary Sloan |
| 2013-12-11 | Got color by trait working, but still need to add a legend and make...some other small changes (like removing samples that don't overlap with the selected trait) Tentatively removed jquery-ui from base.html; I'm not sure if we're still using this anywhere, but removing it doesn't seem to have had an impact on the trait page | Zachary Sloan |
| 2013-12-05 | Now trims selected trait's values by the samples of the primary trait and...gets their distinct values Created function that creates a dictionary of distinct values and their corresponding colors | Zachary Sloan |
| 2013-12-05 | Interval map graph now works properly...Tried to export trait data for "color by trait" function | Zachary Sloan |
| 2013-11-28 | Adding to collection now shows collection you added to and has informative me... | Sam |
| 2013-11-27 | Clicking a trait in "color by trait" now gets all of its sample values...that will be used to color the bar graph | Zachary Sloan |
| 2013-11-27 | Can now view trait list of a collection after clicking the collection...in the modal that pops up after clicking "Color by Trait" above the bar chart | Zachary Sloan |
| 2013-11-26 | Made some progress towards getting the traits inside a collection to display ... | Zachary Sloan |
| 2013-11-25 | Merge branch 'temp' | Zachary Sloan |
| 2013-11-25 | Got the interval mapping results into a table | Zachary Sloan |
| 2013-11-22 | Did some work towards getting the interval mapping page working | Zachary Sloan |
| 2013-11-20 | Merge /home/zas1024/gene | Lei Yan |
| 2013-11-20 | Created a box plot...Made the bar chart use a gradient if colored by something with more than 6 distinct values Put figures in tabs under the Charts/Figures part of the trait page | Zachary Sloan |
| 2013-11-14 | Can change the parameters of Sample Correlation Scatterplot | Lei Yan |
| 2013-11-05 | Merge /home/zas1024/gene...Conflicts: wqflask/wqflask/templates/correlation_page.html | Lei Yan |
| 2013-11-05 | Add Correlation Scatter plot | Lei Yan |
| 2013-11-01 | In the process of opening a modal with the collection page inside | Zachary Sloan |
| 2013-11-01 | In the process of adding the function to color bar chart by the...values of a trait in your collection | Zachary Sloan |
| 2013-11-01 | Merge /home/sam/gene | Zachary Sloan |
| 2013-11-01 | Made the extra attribute bar chart coloring continue to work...when the user sorts and gave the option to revert to no coloring | Zachary Sloan |
| 2013-10-31 | Refactored login code and got remember me working | Sam |
| 2013-10-31 | Implemented superuser and switching users for debugging purposes | Sam |
| 2013-10-30 | More work on collections | Sam |
| 2013-10-30 | Got coloring by attribute working for the bar chart | Zachary Sloan |
| 2013-10-30 | In process on view.html for user_collections | Sam |
| 2013-10-30 | Progress on user collections | Sam |
| 2013-10-25 | Began working on color coding bar chart by extra attributes | Zachary Sloan |
| 2013-10-24 | Added a dynamically resortable bar chart to the trait page...Improved the look/feel of the correlation page somewhat | Zachary Sloan |
| 2013-10-23 | Adding new collections works | Sam |
| 2013-10-22 | Bunch of work on collections and user management | Sam |
| 2013-10-17 | Sample objects are now passed to js_data for drawing the correlation...scatter plot | Lei Yan |
| 2013-10-17 | Merge /home/zas1024/gene...Conflicts: wqflask/wqflask/views.py | Lei Yan |
| 2013-10-17 | Added file for the correlation scatterplot and added the @app...to views.py Added the link to the corr plot page to the correlation page template | Lei Yan |
| 2013-10-16 | Added interval_mapping to views.py...Made some more changes to interval_mapping.py | Zachary Sloan |
| 2013-10-16 | security code cleanup | Sam |
| 2013-10-15 | Merge /home/zas1024/gene | Sam |
| 2013-10-15 | Password reset now works...but needs some error checking still | Sam |
| 2013-10-15 | Before getting rid of query_string in DecodeUser | Sam |
| 2013-10-15 | Changed templates to call the header macro...Correlation page now works with Non-BXD (or whatever group) or All Samples options | Zachary Sloan |
| 2013-10-15 | * Redid mail sending service to set a ping showing it's alive...* Redid server so it wouldn't start unless mail service recently pinged * Wrote a bunch of forgot password code * Refactored sending email about verification and forgotten passwords | Sam |
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