| Branch | Commit message | Author | Age | |
|---|---|---|---|---|
| chores/code-refactoring | code cleanup | Alexander_Kabui | 2 years | |
| chores/lmdb-integration | write files to TMPDIR | Alexander_Kabui | 24 months | |
| chores/script-textfile-generator | modify alloaction size | Alexander_Kabui | 24 months | |
| decouple_tools_and_wqflask_app | Fetch configs from app object not modules | Frederick Muriuki Muriithi | 22 months | |
| hook-up-auth-to-traits-page | Integrate OAuth2 auth with GN2 UI | Frederick Muriuki Muriithi | 24 months | |
| lmdb-code/refactoring | code refactoring | Alexander_Kabui | 22 months | |
| oauth2-migrate-user-details-and-data | oauth2: Migrate user details and data | Frederick Muriuki Muriithi | 2 years | |
| refactor-configurations | Restore `(before/after)_request` functions to original module. | Frederick Muriuki Muriithi | 22 months | |
| rework-genotype-linking | Rework Genotype linking | Frederick Muriuki Muriithi | 23 months | |
| testing | fix: failing tests due to changes in geno_db_exists | John Nduli | 6 months | |
| [...] | ||||
| Tag | Download | Author | Age | |
| v2.0 | genenetwork2-2.0.tar.gz | Pjotr Prins | 9 years | |
| Age | Commit message | Author | ||
| 2022-09-20 | Decompose file into separate modules•••To ease future refactors on the code, decompose the file into a module with multiple modules that can be refactored semi-independently. refactor-data_set_py-20220920 | Frederick Muriuki Muriithi | ||
| 2022-09-19 | Fix broken test•••Because the input element was changed to a button element there was no longer a "value" attribute. I'm not sure what this assert is for, though; I changed it to just check for "Search" in the inner text, which makes it pass. | zsloan | ||
| 2022-09-19 | Remove commented-out html | zsloan | ||
| 2022-09-19 | Provide fixtures for test. Fix error to pass test.•••Provide the following (empty) files to be used for the test * wqflask/tests/unit/wqflask/marker_regression/genotype/bimbam/file_geno.txt * wqflask/tests/unit/wqflask/marker_regression/genotype/bimbam/file_snps.txt Rework the paths in `wqflask/tests/unit/wqflask/marker_regression/test_gemma_mapping.py` such that they point to the files added above for testing. Do not require that the phenotype file exists in `wqflask/wqflask/marker_regression/gemma_mapping.py` before attempting the mapping. | Frederick Muriuki Muriithi | ||
| 2022-09-19 | Remove "wrong" assertions•••The assertions was checking that the function was implemented a certain way, rather than whether the function was doing the correct thing. | Frederick Muriuki Muriithi | ||
| 2022-09-19 | Check paths before running gemma command•••* Check that the required file paths exist * Check the bimbam directory path only once | Frederick Muriuki Muriithi | ||
| 2022-09-19 | Improve error reporting for no mapping results•••* wqflask/wqflask/marker_regression/exceptions.py: new NoMappingResultsError exception * wqflask/wqflask/templates/mapping_error.html: reword display of the errors * wqflask/wqflask/views.py: Raise the NoMappingResultsError exception in the case where there are no results for the mapping. | Frederick Muriuki Muriithi | ||
| 2022-09-19 | Check for file size before attempting parsing•••Empty files lead to json encoding errors; this commit checks whether the file is empty before attempting to parse the file. | Frederick Muriuki Muriithi | ||
| 2022-09-19 | Display correct error for missing file/directory•••Provide the user with the missing file/directory in the error message to make debugging easier. | Frederick Muriuki Muriithi | ||
| 2022-09-19 | Refactor: raise appropriate error•••If a file/directory does not exist, raise the builtin `FileNotFoundError` rather than the generic `Exception`. | Frederick Muriuki Muriithi | ||
| [...] | ||||
 |
index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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