| Age | Commit message (Expand) | Author |
|---|
| 2019-09-24 | Fixed issue that caused logging in to stop working with new GUIX build...Removed some unused JS libraries
| zsloan |
| 2018-04-06 | Removing use ValidationPlugin. See https://github.com/genenetwork/genenetwork... | Pjotr Prins |
| 2017-08-29 | Mostly changes related to getting gemma working with covariates and BIMBAM fi......Other changes include:
- Fixing links in the network graph
- Changing button colors on show trait page
- Changing color scheme for heatmap
- Making rows highlight in yellow when clicked on
- Some changes to table appearance (like giving gene global search a horizontal scroll)
| zsloan |
| 2017-06-13 | Added to border to table footer in search results | zsloan |
| 2017-04-17 | Added option to remove collections from collection list page...Improved appearance of search result and collection tables
| zsloan |
| 2017-04-05 | - Temporary traits can be created, viewed, and added to collections...- Correct PCA trait data is created but can't be saved yet
- Added inner margins by increasing xDomain and yDomain of probability plot on trait page
- Increased X/Y-axis label font size
- Turned "processes" to 0 on runserver.py for PROD setting, since it doesn't work with threading
- Improved appearance of correlation page table
- Added links to github to index page
- Removed js_data from GEMMA/PLINK mapping results, since it isn't used for those
- Removed "Tissue" from trait page for phenotype traits
| zsloan |
| 2017-02-06 | Fixed appearance of several tables (search, mapping results, sample data)...Temporarily removed second sample table for CFW traits
Fixed location of global search bar to work with wider screens
| zsloan |
| 2017-01-26 | GEMMA now works with CFW data (had to update where it looks for the input fil......Y-axis for GEMMA now says -log(p)
Updated the style of the trait sample data table in the trait page
Updated dataset_select_menu_orig.js to also build just the Species and Group drop-downs for the trait input page (as opposed to all 4 drop-downs)
Updated dataset menu json file
Added option to show and hide columns to regular search page using colVis
Changed regular and global search result table styles/column widths
Began work on user trait submission code (not working yet though)
Began work on static loading page for mapping results
| zsloan |
| 2016-12-15 | Changed table appearance...Updated dataset_menu_structure.json
| zsloan |
| 2016-12-12 | Moved a bunch of functions out of the GeneralTrait class that didn't need to ......Improved loadings plot on the correlation matrix page to look like GN1's figure (though it's vector and GN1's was static)
Removed some unused code from show_trait.py
changed appearance of table headers some, though needs a little more work
Updated dataset_menu_structure.json
| zsloan |
| 2016-08-17 | Updated dataTables from 1.10.8 to 1.10.12 on search result page | zsloan |
| 2016-06-18 | Changed file permssions to non-executable | Pjotr Prins |
| 2016-06-17 | Removed trailing spaces in .py and .js files | Pjotr Prins |
| 2016-06-14 | Added y axis line to probability plot and bar chart...Automatically determines number of decimal places to show on y axis of probability plot; still need to figure out how to do it with bar chart
Added some logging to figure out MySQL connection issue
| zsloan |
| 2016-06-03 | Made a bunch of changes to correlation and search result tables (mainly the f... | zsloan |
| 2016-06-03 | Changed appearance of tables to more easily differentiate them from the rest ......Fixed issue where some N/A lrs scores and additive effects were being changed to 0's, which was misleading and kept them from always being sorted at the bottom. They now appear as N/A.
| zsloan |
| 2016-06-02 | Fixed some issues with global search result tables, including:...- Wrong digits for mean expression and additive effect
- Bad loooking width on some columns, like Max LRS Location
- Janky functionality for column resizing and drag-and-dropping (just disabled these functions)
- Geno and Pheno global search tables weren't built in the same way, so now they are
I also fixed the sorting to always put N/A's at the bottom of the table by editing naturalSort.js
| zsloan |
| 2016-02-25 | fixed untracked files | zsloan |
| 2016-02-11 | Updated jquery validation plugin, now works in IE...Fixed a couple minor html syntax erors in login_user.html and base.html
Changed export button on correlation page to csvHtml5, but still has problem with commas in fields being interpreted as a new column
| zsloan |
| 2016-01-26 | Removed a bunch of files/directories/packages that are no longer used and som... | zsloan |
| 2015-10-07 | Adding library for slider used with correlation tool | zsloan |
| 2015-10-05 | Correlation Matrix page is partially complete + fixed some issues with column... | zsloan |
| 2015-08-14 | Added csv download button to search result table; still need to add to other...tables and later attach its functionality to the existing Download Table button
Fixed an issue where rows wouldn't uncheck with backspacing in Select Top text area;
the last commit just fixed the highlighting, not the checkboxes
Some changes in progress towards trying to fix the additive effect issue; the problem is
that the lod_chart.js code writes each chromosome as one d3 path, so I can't change the color
for individual segments within that path. I'll have to completely change the way
the path is drawn for the additive effect
| zsloan |
| 2015-08-12 | Fixed global and regular search so that resizing/reordering columns works for... | zsloan |
| 2015-08-11 | Highlighting works for all trait selection options (select all, invert, selec......Search table and Select Top options added to global and regular search pages
| zsloan |
| 2015-08-04 | Fixed additive effect for lodchart...Made some more changes/improvements to various tables throughout the site
| zsloan |
| 2015-07-23 | Committing most recent changes to tables so Lei can pull; still have a few mo... | zsloan |
| 2015-07-20 | Fixed the code that generates the dataset selection drop-down for correlations...Made changes to the tables of correlation results, collections, and search results:
- Added resizeable columns to correlation results and collections, but not to search results
because it seems that it requires Y scrolling to be set (I'll check if it makes sense to add scrolling
to the search results)
- Correlation results and collections are now in scrolling tables
- The style is the same across all of these tables now
Remaining issues:
- It doesn't seem like I can set the column width when initializing dataTables in
correlation results. I don't know why this is; it might be due to the table already being the size
of a full page. I want to be able to default to some good widths, even if the user can resize them
- I tried adding hoverForMore, but it doesn't seem to cooperate with datatable cells; I think this is
due to having to put the text in a div.
| zsloan |
| 2015-05-26 | use NVD3 for bar charts...added informative tooltips and error bars
| Artem Tarasov |
| 2015-05-23 | new probability plot (using NVD3 library)...* z scores are computed on the client side (using jStat library)
* added Shapiro-Wilk test results
| Artem Tarasov |
| 2014-09-22 | Adding the port as a parameter to runserver; this should just be temporary until...I figure out how to get it to read the port from the config file instead
Using runserver.py instead of secure_server.py because of an error with the latter
that I haven't figured out how to fix yet
Improved the appearance of several of the tables
| Zachary Sloan |
| 2014-07-14 | Made interval map zoom look better...Started creating probability plot for show trait page
Added outlier detection message when user does mapping
| Zachary Sloan |
| 2014-05-05 | Committing a bunch of changes related to integrating GEMMA and...adding the correlation matrix page
| Zachary Sloan |
| 2014-01-24 | Added natural sort to sort the index column for the sample data in...the trait page
Hid the Quick Search on the index page until it is working well.
Started writing a file to run the pyLMM code in the background to
avoid memory issues/timing out
| Zachary Sloan |
| 2013-11-25 | Got the interval mapping results into a table | Zachary Sloan |
| 2013-02-13 | Got results displaying for BXD and fixed genofile_parser.py to work...for all of our genofiles
| Zachary Sloan |
| 2012-10-05 | Worked on rewriting search page parsing code....Downloaded jquery validation code to use with the block index feature
on the trait data page (as well as others in the future).
| Zachary Sloan |
| 2012-07-05 | Added DataTables | Sam Ockman |
