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2022-03-16Add code generating the new genotype fileszsloan
2022-03-16Generate JSON file for target genotypeszsloan
2022-03-16Fix the way target/source genofiles were being processed + some other changeszsloan
2022-03-16Add function for mapping strain to sample pos + begin creating generate_new_g...zsloan
2022-03-16Add function for getting strain name from sample namezsloan
2022-03-16Change EOL from CRLF to LFzsloan
2022-03-16Minor changes/bug fixeszsloan
2022-03-16Add in-progress gen_ind_genofiles.pyzsloan
2022-03-10Use context manager with database connectionFrederick Muriuki Muriithi
2021-10-28Remove all elasticsearch references in gn2BonfaceKilz
2021-04-30autopep8: Run autopep8 100 times with target rulesBonfaceKilz
2021-04-30autopep8: Fix E121,E122,E123,EI24,E125,E126,E127,E128,E129,E131,E133BonfaceKilz
2021-04-30autopep8: Fix E101, E11BonfaceKilz
2021-04-30autopep8: Fix W504BonfaceKilz
2021-04-30autopep8: Fix W291, W292, W293, W391BonfaceKilz
2021-04-30autopep8: Fix E70 and E701BonfaceKilz
2021-04-30autopep8: Fix E501BonfaceKilz
2021-04-30autopep8: Fix E301,E302,E303,E304,E305,E306BonfaceKilz
2021-04-30autopep8: Fix E20-E27BonfaceKilz
2021-04-29Run `sed -i 's/(object)//g'`BonfaceKilz
2020-08-26Remove "from __future__ import new_feature" statementsBonfaceKilz
2020-08-20Handle module renames in the standard libraryBonfaceKilz
2020-08-19Remove extra whitespace(or add it) from comma separated itemsBonfaceKilz
2020-08-19Rename xrange() to range() and wrap existing range() calls with listBonfaceKilz
2020-08-19Replace `izip` with python's built-in equivalentBonfaceKilz
2020-08-19Fix dictionary iteration methodsBonfaceKilz
2020-07-06Fixed some of the logic with how traits are authenticated to avoid situation ...zsloan
2020-06-20Added some admin functionality and fixed issue with temp traitszsloan
2020-06-17A user's id is now set as a parameter if it doesn't already existauthentication_testzsloan
2020-06-17Adding all the authentication stuffzsloan
2020-06-05Commiting other current group/resource management code, plus the new fileszsloan
2020-03-10Added back macaque monkey to dropdown generation, not sure why it was removed...zsloan
2019-12-09Fixed minor issue that caused the sample list to be fetched incorrectly for a...zsloan
2019-10-18Added UniProt link and fixed issue that caused sample lists to not be formed ...zsloan
2019-05-14Added all of the third party links from GN1zsloan
2019-04-04Fixed issue where dataset_menu_structure.json included some groups with no vi...zsloan
2019-04-03Fixed an issue that caused global phenotype search to often not work and cert...zsloan
2019-03-27Changed gen_select_dataset.py to be able to show multiple datasets under the ...zsloan
2018-12-21Fixed collections so they can be very large (1000+ traits)zsloan
2018-12-05Fixed issue where SNP track for mapping did not appear correctlyzsloan
2018-11-20Added option to select chromosome from trait page when mappingzsloan
2018-10-11- Added fix for GEMMA LOCOzsloan
2018-10-01- Can now remove cofactors from correlation scatterplot and select them by ju...zsloan
2018-05-25Fixed issue causing anonymous collections to not work on my branch and stagin...zsloan
2018-05-17Added script to quantile normalize a data set and enter its normalized sample...zsloan
2018-04-23Changed GEMMA mapping to use -lmm 2 (Likelihood ratio test) as a parameter in...zsloan
2018-04-16Resolved conflicts after pulling changeszsloan
2018-04-12README and docsPjotr Prins
2018-04-09Removed unused code from get_select_dataset.py and get_group_samplelists.py s...zsloan
2018-04-09Removed unused code from convert_geno_to_bimbam.py and corestats.pyzsloan
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