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AgeCommit message (Expand)Author
2020-05-28Added lines calling proxy for publish datasets + added some resource redis qu...zsloan
2020-05-21Made search result table width variable again and fixed row highlighting, tho...zsloan
2020-05-07Fixed blatseq issue and geno correlation issueblatseq_fixzsloan
2020-05-07Committing current progress on group manager + a minor fix in dataset.pyzsloan
2020-04-27Added timeout for when/if it does the REST API query, so it doesn't hang inde...zsloan
2020-04-27Made change that should allow dataset structure to be loaded from Redis inste...zsloan
2020-04-26Removed the code that was still writing the database menu JSONzsloan
2020-04-24Replaced hard-coded instances of GN2 urls with ones pulled from settings filezsloan
2020-04-24Made a fix that should prevent the issue where new datasets cause an error wh...zsloan
2020-04-06Added Mean column for phenotype traits in search and global search result tableszsloan
2020-03-27Fixed issue where GEMMA wasn't showing up for certain groupszsloan
2020-03-27Added integration for using RData files with R/qtl, plus some other changes t...zsloan
2020-03-09I think this should complete consolidating all the collections code.zsloan
2020-03-03Forgot to replace code referring to hmac function user_managerzsloan
2020-02-07Users can now add and do mapping on genotype files that only include a subset......Also filtered the results used by Christian's genome browser, so now it should have an easier time loading when dealing with larger numbers of markers zsloan
2020-02-06Fixed encoding issuezsloan
2020-01-22Fixed issue that caused submitting temp traits to not workzsloan
2020-01-08Made change that I think should fix the unicode stuff once and for allzsloan
2019-12-17Added RGD link to trait page and removed Genotation link since it isn't workingzsloan
2019-12-04Added M to the possible non-number 'chromosome' nameszsloan
2019-12-04Fixed error that sometimes occurs if there's no mean expression and changed i...zsloan
2019-11-21Use updated phenotype display IDs for all phenotypes with codes now, not just...zsloan
2019-11-21Added 3-letter codes to unpublished phenotype traits and fixed issue with ord...zsloan
2019-11-14Changed code to rebuild dataset list each time you view the trait page to avo......Fixed logic for UniProt link to use UniProtId instead of protein ID zsloan
2019-11-05Fixed issue with ordering items in correlation dataset select dropdownzsloan
2019-10-24Changed logic for generating drop-downs such that it shows the correct Phenot...zsloan
2019-10-18Added UniProt link and fixed issue that caused sample lists to not be formed ...zsloan
2019-10-04Fixed issue where there was an error if the REST API used for aliases was down...Added option to download as JPEG in addition to SVG for basic stats figures zsloan
2019-08-22Changed header drop-down menu layout...Added a couple new third party links Added link to GN1 trait page in trait pages Fixed gene global search table appearance zsloan
2019-08-01Updated aliases to get all species aliases and remove duplicateszsloan
2019-08-01Added wikidata aliases...Fixed year to not be a hyperlink when no pubmed id Fixed first column width so it doesn't go onto two lines for trait details zsloan
2019-08-01Made some more aesthetic changes to various pages and charts/figures...Added some information to the mapping loading page zsloan
2019-07-23Added change to automatically update datasets list using rest api instead of ......Removed option to edit certain html pages, like news, policies, etc zsloan
2019-07-18Made change that should fix encoding issue, fingers crossedzsloan
2019-07-03Fixed bug for creating one of the third party links on the trait page...Changed text in several pages (submit trait, mapping error) Changed header menu structure some zsloan
2019-06-24Got non-LOCO GEMMA mapping working with gemma-wrapper (so caching should work......Fixed position digits and row highlighting on interval analyst table Updated default MAF to 0.05 Updated footer text zsloan
2019-06-18Fixed issue with sorting involving 0's on trait page...Fixed links to dataset info pages in search results and correlation results pages zsloan
2019-06-05Fixed issue that caused interval mapping to not work because the python imple......Fixed issue where the last chromosome wasn't displayed for mapping results (though still need to fix issue where points are drawn too far to the right when a specific range is viewed) zsloan
2019-06-04Added GeneMANIA link...Fixed issue that caused error when creating UCSC RefSeq link Fixed issue that sometimes caused an error for phenotype searches Changed some text on collections page zsloan
2019-05-24Replaced qtlreaper Dataset object with python objectzsloan
2019-05-14Added all of the third party links from GN1...Fixed issue with the script that generates the drop-down menus where phenotype/genotype datasets wouldn't show up for species without any mRNA assay datasets Added icon for smartphones/tablets Made error more informative for main search Added gene symbol column to collections (need to add something that removes the column if it's all empty) zsloan
2019-05-06Removed some unused imports of htmlgen...Fixed a bug that sometimes occurred in search results Changed order of items on index page zsloan
2019-03-18- Added PCA traits to correlation matrix. You can't change their names yet or......but you can click them and access them from the trait page. I'll add the option to access them from the corr matrix page as well, but adding the option to change their names might be trickier since they're currently used as their Redis keys. I need some better way of passing the Redis key around so it can be stored in collections, but this is tricky without changing the structure in ElasticSearch - Fixed the way temp traits work so you can use them with various functions, like mapping, correlations, network graph, etc - Fixed some appearance issue where the network graph options were too wide if a trait name was too long zsloan
2019-03-07Changed the way covariates are displayed when selected for mapping...Made the outlier notification appear for all mapping methods Removed some misleading text saying "Block samples" from the Transform and Filter Data section zsloan
2019-02-22Fixed some appearance issues with several tables...Fixed issue where cofactor selection screens were broken Changed case attributes to be applied across groups, though need to discuss this with Rob since it shouldn't always be done this way Added new inversion transformation zsloan
2019-02-15Fixed error caused by change to N values in database (now takes strings inste......Fixed error that caused N to show up as "null" in the trait sample table instead of "x" zsloan
2019-02-13Removed pylmm references and related functionsPjotr Prins
2019-02-12Added GeneWeaver linkout...Fixed some issues with sorting in various tables Changed header appearance for some pages Fixed bug where basic stats table would sometimes be duplicated or show up with empty fields zsloan
2019-02-05Fixed issue with getting marker info that affected heatmap and possibly other......Added the collection page features (correlation matrix, network graph, third party link-outs, etc) to the search result and correlation result pages zsloan
2019-01-11Got InDel working for Variant Browser...Changed Variant Browser to display gene name under "Domain" when the user searches a gene term and rows are mislabeled "Intergenic" Fixed Chr option to display correct chromosomes for different species Fixed order for correlation drop-down on trait page Fixed some appearance issues with the mapping results table Improved appearance of correlation scatterplot page zsloan