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2013-07-19Finished integrating code that reads sample list from geno filesZachary Sloan
2013-07-19Created file gen_group_samplelists that iterates through all genofilesZachary Sloan
2013-07-18Added Amelie's rat data genotypesZachary Sloan
2013-07-18Merge branch 'master' of https://github.com/zsloan/genenetworkZachary Sloan
2013-07-18Added to installation notesZachary Sloan
2013-07-17Fixed gen_select_dataset.pyZachary Sloan
2013-07-16Wrote code that can get a dataset's type for every single GNZachary Sloan
2013-06-27Created a group manager page where user administrators can createZachary Sloan
2013-06-26Moved code creating DataSets object to a function in dataset.pyZachary Sloan
2013-06-26Got code that creates DataSets object runningZachary Sloan
2013-06-25Added DataSets class to dataset.py that will be used to create list ofZachary Sloan
2013-06-21Fixed bug where cursor was still being used in queryZachary Sloan
2013-06-20Merge branch 'flask' of git://github.com/leiyan/GeneNetwork2-Python into flaskZachary Sloan
2013-06-19Fixed issue where the Mean Expr, Max LRS, and Max LRS Location columnsLei Yan
2013-06-19Merge branch 'flask' of git://github.com/zsloan/genenetwork into flaskLei Yan
2013-06-19Changed QTL parameter name to "get_qtl_info" on trait.py andLei Yan
2013-06-19Merge branch 'flask' of git://github.com/leiyan/GeneNetwork2-Python into flaskZachary Sloan
2013-06-13Merge /home/sam/gene into flaskZachary Sloan
2013-06-13Fixed issue where too much memory was used as a result of creating aLei Yan
2013-06-12Fixed a couple issues with the template that caused theZachary Sloan
2013-06-11Put trait info for correlation results page into a dictionary insteadLei Yan
2013-05-31Fixed the location column for the quick search pageZachary Sloan
2013-05-30Rewrote some code in get_trait_info in dataset.pyLei Yan
2013-05-28Have correlation values appearing in a table in the templateLei Yan
2013-05-23Worked on rewriting the function in data_set.py that gets the sampleLei Yan
2013-05-23Changed the way the query that gets sample ids is generatedLei Yan
2013-05-23Now calculates correlation values for traits, but not yet in templateLei Yan
2013-05-09Just added some print statements so I can show matrix/vectorZachary Sloan
2013-05-08Worked on correlation pageLei Yan
2013-04-17Created file with pickled SNPIterator (from input.py) dataZachary Sloan
2013-04-09Nick's code works fine with human dataZachary Sloan
2013-04-05Made changes to get pylmm code working with HMDP datasetsZachary Sloan
2013-04-02Committing before splitting code that runs pylmm with plink filesZachary Sloan
2013-04-02pylmm code is running for human data (plink .bed genotype files)Zachary Sloan
2013-03-19Searches work for the full access human datasets with mRNA assayZachary Sloan
2013-03-12Added the script generating probesetfreeze data matrix filesZachary Sloan
2013-03-12Got cashing working with pickleZachary Sloan
2013-03-07Progress bar is now completely workingZachary Sloan
2013-03-02Created generate_probesetfreeze_file to create theZachary Sloan
2013-02-22Added some to notesZachary Sloan
2013-02-14Have marker regression results displaying as a scatterplot (just the points)Zachary Sloan
2013-02-13Fixed some bugs related to getting the marker regression page workingZachary Sloan
2013-02-12Edited marker_regression.py and data_set.py to store the p-valuesZachary Sloan
2013-02-07Added code to marker_regression.py that creates the numpy arrays toZachary Sloan
2013-01-31Changed fd to kw in search_results.py, commented out some linesZachary Sloan
2013-01-25Fixed a few bugs while trying to get the code running on the new serverZachary Sloan
2013-01-18Renamed CorrelationPage.py to show_corr_results.pyZachary Sloan
2013-01-08Created IndChromosome class in species.py and wrote functions forZachary Sloan
2013-01-08Deleted some unnecessary code in marker_regression.py and fixed some bugsZachary Sloan
2013-01-03Began working on marker_regression.py and created Chromosomes classZachary Sloan
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