genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Expand)	Author
2024-10-29	Read connection detail from file. Use contextmanager.	Frederick Muriuki Muriithi
2024-10-29	Use argparse.ArgumentParser to collect CLI args from user	Frederick Muriuki Muriithi
2024-10-29	Change indentation, wrap code in function and create entry-point.	Frederick Muriuki Muriithi
2024-03-22	Update ProbeSetSE table schema.	Frederick Muriuki Muriithi
2024-01-02	Move default settings into gn2 module.	Arun Isaac
2023-10-24	Add script for converting the HXBBXH genotype file provided by Hao.	zsloan
2023-10-24	Add script for creating list of ProbeSet datasets with NAs for Max QTL	zsloan
2023-06-22	Update calls to `database_connection` function	Frederick Muriuki Muriithi
2023-03-08	Add DataAnalyzer.py script to maintenance scripts	zsloan
2023-02-03	Add perf scripts that compare fetching a trait using GN API vs LMDB	Munyoki Kilyungi
2023-01-26	Dump metadata in addition to sample data.	Munyoki Kilyungi
2023-01-20	Make dump script faster by using concurrency module	Munyoki Kilyungi
2023-01-20	Dump all sample data into a given directory	Munyoki Kilyungi
2023-01-20	Return a trait's display name if the name is non-existent	Munyoki Kilyungi
2023-01-20	Update demo to dump entire dataset for BXDPublish	Munyoki Kilyungi
2023-01-20	Remove hard-coded values	Munyoki Kilyungi
2023-01-20	Fix typo	Munyoki Kilyungi
2023-01-20	Add example that demos dumping data from an entire dataset	Munyoki Kilyungi
2023-01-20	Add a function that fetches all the traits given the right params	Munyoki Kilyungi
2023-01-20	Create script to dumple sample data given the dataset and trait id	Munyoki Kilyungi
2022-06-03	Give speciesid single quotes like the other config_dic keys, just for consist...	zsloan
2022-06-03	Allow GenoFreezeId to be passed in configurations to load_genotypes.py	zsloan
2022-03-11	Add updated version of script for adding new expression sample data	zsloan
2022-03-10	Use context manager with database connection	Frederick Muriuki Muriithi
2021-12-17	Some updates to the DOL genotypes conversion script	zsloan
2021-11-05	Add created_timestamp when creating a new group	BonfaceKilz
2021-11-05	Add created_timestamp when creating a new group	BonfaceKilz
2021-11-05	Use members uuid	BonfaceKilz
2021-11-05	Add script for manually adding "editors" to each resource	BonfaceKilz
2021-10-25	scripts: resource: Add value for "admin" when updating resources	BonfaceKilz
2021-10-25	scripts: resource.py: Add shebang	BonfaceKilz
2021-10-25	scripts: group.py: Add extra optional arg to specify uid	BonfaceKilz
2021-10-25	scripts: group.py: Add shebang	BonfaceKilz
2021-10-22	Include the admin privilege for the 'editors' group, since it wasn't being se...	zsloan
2021-10-08	Fixed the sort to account for both chr and pos in a kind of hack-y way + adde...	zsloan
2021-10-08	Adding convert_dol_genotypes.py to scripts; everything is hard-coded in it si...	zsloan
2021-10-06	scripts: resource: Add option for specifying a groups uuid	BonfaceKilz
2021-10-06	scripts: group: Replace args.group_name with data["field"]	BonfaceKilz
2021-10-06	scripts: group: Update docstrings for "create_group_data"	BonfaceKilz
2021-10-06	scripts: group: Break up long line	BonfaceKilz
2021-10-06	scripts: group: Fix indentation	BonfaceKilz
2021-10-06	scripts: group: Remove empty `""` value for data.get	BonfaceKilz
2021-10-06	scripts: group: Remove unused import	BonfaceKilz
2021-10-06	scripts: group: Use a unique key to identify a group	BonfaceKilz
2021-10-04	Moved REDIS_CONN back into if __name__ == '__main__' since it doesn't need to...	zsloan
2021-10-04	Changed the group.py script to replace user e-mails with IDs and to include i...	zsloan
2021-10-04	scripts: group.py: Modify exit message when displaying updated data	BonfaceKilz
2021-10-04	scripts: group.py: Remove "glom" dependency	BonfaceKilz
2021-10-04	Decode redis response by default	BonfaceKilz
2021-10-04	Modify resource editing script to enable data backups & restoration	BonfaceKilz