| Age | Commit message (Expand) | Author |
|---|
| 2024-10-29 | Read connection detail from file. Use contextmanager....Read connection details from file to make it easier to change host(s)
in use.
Use contextmanager to manage the connections.
| Frederick Muriuki Muriithi |
| 2024-10-29 | Use argparse.ArgumentParser to collect CLI args from user...Collect arguments from the CLI using argparse rather than sys.argv
directly.
| Frederick Muriuki Muriithi |
| 2024-10-29 | Change indentation, wrap code in function and create entry-point. | Frederick Muriuki Muriithi |
| 2024-03-22 | Update ProbeSetSE table schema. | Frederick Muriuki Muriithi |
| 2024-01-02 | Move default settings into gn2 module. | Arun Isaac |
| 2023-10-24 | Add script for converting the HXBBXH genotype file provided by Hao....Paths and sample/chromosome lists are hard-coded just because this was probably a one-time thing, but still commiting it since it's good to have it around in case we need to use it again
| zsloan |
| 2023-10-24 | Add script for creating list of ProbeSet datasets with NAs for Max QTL | zsloan |
| 2023-06-22 | Update calls to `database_connection` function...Pass in the database URI at call time.
| Frederick Muriuki Muriithi |
| 2023-03-08 | Add DataAnalyzer.py script to maintenance scripts | zsloan |
| 2023-02-03 | Add perf scripts that compare fetching a trait using GN API vs LMDB...* scripts/performance/(README,org, timeit_gn2.py, timeit_lmdb.py): New
files.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2023-01-26 | Dump metadata in addition to sample data....* scripts/sampledata: Dump metadata in addition to data.
| Munyoki Kilyungi |
| 2023-01-20 | Make dump script faster by using concurrency module | Munyoki Kilyungi |
| 2023-01-20 | Dump all sample data into a given directory...* scripts/sampledata.py: Import gen_dropdown_json.
(main): Dump all the sample data from all the datasets into a given directory.
| Munyoki Kilyungi |
| 2023-01-20 | Return a trait's display name if the name is non-existent...* scripts/sampledata.py (fetch_all_traits): Should the name of a trait
not exists, e.g. in probeset data, return it's display name.
| Munyoki Kilyungi |
| 2023-01-20 | Update demo to dump entire dataset for BXDPublish...* scripts/sampledata.py: Import os and sys.
<__name__>: Add demo to dump "BXDPublish" dataset.
| Munyoki Kilyungi |
| 2023-01-20 | Remove hard-coded values...* scripts/sampledata.py (dump_sample_data): Remove hard-coded values
for trait_id and dataset_name.
| Munyoki Kilyungi |
| 2023-01-20 | Fix typo | Munyoki Kilyungi |
| 2023-01-20 | Add example that demos dumping data from an entire dataset | Munyoki Kilyungi |
| 2023-01-20 | Add a function that fetches all the traits given the right params...* scripts/sampledata.py (fetch_all_traits): New function.
| Munyoki Kilyungi |
| 2023-01-20 | Create script to dumple sample data given the dataset and trait id...* scripts/sampledata.py: New file.
| Munyoki Kilyungi |
| 2022-06-03 | Give speciesid single quotes like the other config_dic keys, just for consist... | zsloan |
| 2022-06-03 | Allow GenoFreezeId to be passed in configurations to load_genotypes.py | zsloan |
| 2022-03-11 | Add updated version of script for adding new expression sample data | zsloan |
| 2022-03-10 | Use context manager with database connection...Use the `with` context manager with database connections and cursors
to ensure that they are closed once they are no longer needed.
Where it was not feasible to use the `with` context manager without a
huge refactor/rewrite, the cursors and connections are closed manually.
| Frederick Muriuki Muriithi |
| 2021-12-17 | Some updates to the DOL genotypes conversion script | zsloan |
| 2021-11-05 | Add created_timestamp when creating a new group | BonfaceKilz |
| 2021-11-05 | Add created_timestamp when creating a new group | BonfaceKilz |
| 2021-11-05 | Use members uuid | BonfaceKilz |
| 2021-11-05 | Add script for manually adding "editors" to each resource | BonfaceKilz |
| 2021-10-25 | scripts: resource: Add value for "admin" when updating resources | BonfaceKilz |
| 2021-10-25 | scripts: resource.py: Add shebang | BonfaceKilz |
| 2021-10-25 | scripts: group.py: Add extra optional arg to specify uid | BonfaceKilz |
| 2021-10-25 | scripts: group.py: Add shebang | BonfaceKilz |
| 2021-10-22 | Include the admin privilege for the 'editors' group, since it wasn't being se... | zsloan |
| 2021-10-08 | Fixed the sort to account for both chr and pos in a kind of hack-y way + adde... | zsloan |
| 2021-10-08 | Adding convert_dol_genotypes.py to scripts; everything is hard-coded in it si... | zsloan |
| 2021-10-06 | scripts: resource: Add option for specifying a groups uuid | BonfaceKilz |
| 2021-10-06 | scripts: group: Replace args.group_name with data["field"] | BonfaceKilz |
| 2021-10-06 | scripts: group: Update docstrings for "create_group_data" | BonfaceKilz |
| 2021-10-06 | scripts: group: Break up long line | BonfaceKilz |
| 2021-10-06 | scripts: group: Fix indentation | BonfaceKilz |
| 2021-10-06 | scripts: group: Remove empty `""` value for data.get...data.get("field") will default to None if there is no value; and None
is falsy.
| BonfaceKilz |
| 2021-10-06 | scripts: group: Remove unused import | BonfaceKilz |
| 2021-10-06 | scripts: group: Use a unique key to identify a group | BonfaceKilz |
| 2021-10-04 | Moved REDIS_CONN back into if __name__ == '__main__' since it doesn't need to... | zsloan |
| 2021-10-04 | Changed the group.py script to replace user e-mails with IDs and to include i... | zsloan |
| 2021-10-04 | scripts: group.py: Modify exit message when displaying updated data | BonfaceKilz |
| 2021-10-04 | scripts: group.py: Remove "glom" dependency | BonfaceKilz |
| 2021-10-04 | Decode redis response by default | BonfaceKilz |
| 2021-10-04 | Modify resource editing script to enable data backups & restoration | BonfaceKilz |
