| Age | Commit message (Expand) | Author |
|---|---|---|
| 2024-07-03 | Add link to GeneCup to tool buttons...This also includes a function for converting a list of traits/datasets to symbols, which was added to trait.py | zsloan |
| 2024-05-29 | Handle attributeError when getting error codes. | Alexander_Kabui |
| 2024-05-28 | BugFix: return correct status code for generic exceptions handler. | Alexander_Kabui |
| 2024-05-20 | Check metadata exists before setting 'editable' field in get_dataset....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-05-13 | Disable gnqa functionality.... * to test the functionality use ga.genenetwork.org | Alexander_Kabui |
| 2024-05-09 | Remove debug statements. | Alexander_Kabui |
| 2024-05-09 | Improve error messaging for errors in gn fahamu UI. | Alexander_Kabui |
| 2024-04-30 | Use a dataset's label instead of it's id when fetching auth details....* gn2/wqflask/views.py (get_dataset): Use a dataset's label as it's identifier. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-04-23 | Create an endpoint for gnqa test template | Alexander_Kabui |
| 2024-04-11 | Merge pull request #838 from genenetwork/feature/refactor-gnqa-ui...Feature/refactor gnqa UI | Alexander Kabui |
| 2024-04-05 | Refactor gnqa history endpoint.... * require gn-auth | Alexander_Kabui |
| 2024-04-05 | Update gnqa rating route. | Alexander_Kabui |
| 2024-04-02 | Use the dataset id to fetch the authorisation roles....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-03-27 | Require ouath2 for gnqa history search....* gn2/wqflask/views.py (gnqna_hist): Add "require_oauth2" decorator. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Co-authored-by: Alexander Kabui <alexanderkabua@gmail.com> | Munyoki Kilyungi |
| 2024-03-27 | Require log-in to use the gn-qa search system....* gn2/wqflask/views.py: Import require_oauth2. (gnqna): Add "require_oauth2" decorator. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Co-authored-by: Alexander Kabui <alexanderkabua@gmail.com> | Munyoki Kilyungi |
| 2024-03-26 | Only display the "edit" link when a user has edit permissions....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-03-26 | Import user_logged_in from the clients module....Importing "user_logged_in" in the checks module just to export adds a layer of indirection and makes the code hard to read. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-03-26 | Remove unused imports....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-03-26 | Remove unused declared variable....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-03-26 | Delete search dataset functionality in RDF....* gn2/wqflask/views.py (search_for_dataset): Delete. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-03-26 | Delete unused page....* gn2/wqflask/views.py (display_diffs_admin): Delete. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-03-22 | add gnqa evaluation UI | Alexander_Kabui |
| 2024-03-05 | disable login requirement for gnqa on cd... * reason gnqa and gn-auth are currently unstable | Alexander_Kabui |
| 2024-02-16 | pep8 formatting | Alexander_Kabui |
| 2024-02-16 | init check for user login | Alexander_Kabui |
| 2024-01-25 | add view point for gnqa search history | Alexander_Kabui |
| 2024-01-16 | add UI for reference rating gn-llm documents | Alexander_Kabui |
| 2024-01-12 | Switch NCBI link from http to https in failing test and RDF query....* gn2/tests/wqflask/show_trait/test_show_trait.py (test_get_ncbi_summary_request): Replace "http://eutils.ncbi.nlm.nih.gov" with "https://eutils.ncbi.nlm.nih.gov" * gn2/wqflask/views.py (get_probeset): Ditto. Co-authored-by: Alexander Kabui <Alexanderkabua@gmail.com> Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-01-10 | Add dataset metadata to genotype page when a dataset is specified....* gn2/wqflask/templates/genotype.html: Add extra dataset metadata. * gn2/wqflask/views.py (get_genotype): Extend genotype URL to enable specifying the dataset name. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-01-09 | Update script's module path. | Frederick Muriuki Muriithi |
| 2024-01-08 | Include Entrez summary for a geneID on the ProbeSet page....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-01-08 | Add dataset metadata to probeset page when a dataset is specified....* gn2/wqflask/templates/probeset.html: Add extra dataset metadata elements for groups, species, tissue name and dataset link. * gn2/wqflask/views.py (get_probeset): Extend probeset URL to enable specifying the dataset name. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-01-08 | revert to use GN3_LOCAL_URL for gn3 api endpoint | Alexander_Kabui |
| 2024-01-08 | fix url error | Alexander_Kabui |
| 2024-01-08 | fix url error | Alexander_Kabui |
| 2024-01-08 | merge testing | Alexander_Kabui |
| 2024-01-08 | revert commit gn server url | Alexander_Kabui |
| 2024-01-06 | Add probeset RDF page....* gn2/wqflask/templates/probeset.html: New probeset HTML file. * gn2/wqflask/views.py (get_probeset): New function. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-01-05 | fix error | Alexander_Kabui |
| 2024-01-05 | fetch gn_server_url from current config | Alexander_Kabui |
| 2024-01-02 | Fix path to error GIFs....genenetwork2 is now run from the top-level directory of the repo. So, we prepend gn2 to the error GIF path. * gn2/wqflask/views.py (handle_generic_exceptions): Prepend gn2 to error GIF path. | Arun Isaac |
| 2024-01-02 | Change the way the info button works so that it just submits a form instead o... | zsloan |
| 2024-01-02 | Consistently use GN_VERSION from app config....GN_VERSION is set in the configuration file and read into the app config dictionary. Use that instead of re-reading from the etc/VERSION file. * gn2/utility/tools.py (gn_version): Delete function. (GN_VERSION): Delete variable. * gn2/wqflask/metadata_edits.py (display_phenotype_metadata, display_probeset_metadata, show_history): Use GN_VERSION in app config. * gn2/wqflask/views.py: Do not import GN_VERSION from gn2.utility.tools. (handle_generic_exceptions, index_page.__render__, submit_trait_form): Use GN_VERSION in app config. | Arun Isaac |
| 2023-12-29 | Namespace all modules under gn2....We move all modules under a gn2 directory. This is important for "correct" packaging and deployment as a Guix service. | Arun Isaac |
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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