genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Collapse)	Author
2016-04-20	Adding small figures per trait, so that users can see CTL and QTL for each ↵	DannyArends
	individual phenotype
2016-04-20	Adding parameters, and passing them to the CTL algorithm	DannyArends

2016-04-20	Working on the output template of CTL	DannyArends

2016-04-20	Updates to the CTL code adding the significant results to the result object	DannyArends

2016-04-20	Cleaning code, adding comments	DannyArends

2016-04-20	Adding the lineplot image to the output	DannyArends

2016-04-20	Adding code to do initial CTL mapping (working on the BXD)	DannyArends

2016-04-20	Parsing the names of the individuals, and coding H as -999	DannyArends

2016-04-20	Minor changes to the CTL setup template	DannyArends

2016-04-20	Using the geno parser to get/parse the genotypes for the dataset	DannyArends

2016-04-20	Adding the geno file parser from Zach	DannyArends

2016-04-20	Creating the analysis object and passing results to the results template	DannyArends

2016-04-20	[PATCH 082/100] Testing passing information between the templates	DannyArends

2016-04-20	Loading the library and mapping the scan function	DannyArends

2016-04-20	Connecting the CTL analysis to the collection overview, by adding a button	DannyArends

2016-04-20	Adding initial file to perform CTL analysis	DannyArends

2016-04-20	[PATCH 078/100] Adding empty templates for CTL in GN2	DannyArends

2016-04-20	Cleaning up the WGCNA parameter input template	DannyArends

2016-04-20	Docs: Database and Guix	Pjotr Prins

2016-04-20	README	Pjotr Prins

2016-04-20	README	Pjotr Prins

2016-04-20	README	Pjotr Prins

2016-04-20	README	Pjotr Prins

2016-04-20	README	Pjotr Prins

2016-04-20	README	Pjotr Prins

2016-04-20	README	Pjotr Prins

2016-04-20	README	Pjotr Prins

2016-04-20	README	Pjotr Prins

2016-04-20	README	Pjotr Prins

2016-04-20	Remove outdated installation instructions	Pjotr Prins

2016-04-20	Removed outdated info	Pjotr Prins

2016-04-20	docs: muck out outdated info	Pjotr Prins

2016-04-20	Simplify the README so people can actually READ it.	Pjotr Prins

2016-04-20	[PATCH 061/100] Put R/qtl .cross file in TMPDIR	Pjotr Prins

2016-04-20	Show error when GENODIR is missing	Pjotr Prins

2016-04-20	GN2_BASE_PATH	pjotrp

2016-04-20	Handle settings in guix store	pjotrp

2016-04-20	setup: prepare for Guix runtime	pjotrp

2016-04-20	Remove dbdoc	pjotrp

2016-04-20	Removed symlinks	pjotrp

2016-04-20	r-wgcna: Fix paths	pjotrp

2016-04-20	More hard-coded	pjotrp

2016-04-20	[PATCH 050/100] Using out-of-tree storage. Added comments for plink,	Pjotr Prins
	gemma.
2016-04-20	[PATCH 049/100] SNP_PATH: removal	Pjotr Prins

2016-04-20	Update INSTALL.md	pjotrp

2016-04-20	[PATCH 047/100] This commit moves the image generation dir outside the git ↵	Pjotr Prins
	repository.
2016-04-20	external program should fail on return value not zero	pjotrp

2016-04-20	[PATCH 045/100] Reverted on previous changes. With a corrected	Pjotr Prins
	python2-piddle module the thing works. Turns out that the version we are using is not the same as the public one. Despite the same version number.
2016-04-20	Minor fixes	pjotrp

2016-04-20	[PATCH 042/100] Sanitizing locations	Pjotr Prins