| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2021-06-07 | wqflask: views: Re-order imports and remove dead comments | BonfaceKilz | |
| 2021-06-07 | wqflask: views: Insert data into metadata_audit table | BonfaceKilz | |
| 2021-06-07 | wqflask: views: Replace "simplejson" with "json" | BonfaceKilz | |
| 2021-06-07 | wqflask: views: Remove null-check for forms | BonfaceKilz | |
| Right now, only changed data is submitted from JavaScript. | |||
| 2021-06-07 | templates: edit_trait: Use correct name for text-area field | BonfaceKilz | |
| 2021-06-07 | templates: edit_trait: Add hidden inputs that contain old values | BonfaceKilz | |
| 2021-06-07 | Update class docstring | jgart | |
| Author: jgart <jgart@dismail.de> Date: Fri Jun 4 22:12:35 2021 +0000 | |||
| 2021-06-04 | Set widths for column in gene global search + set min-width for table as a whole | zsloan | |
| 2021-06-03 | Change LRS scores of 0.000 to N/A since they're listed wrong in the DB + fix ↵ | zsloan | |
| issue where locus_chr and locus_mb pointing to the wrong positions in the query results | |||
| 2021-06-03 | Changed gsearch_pheno template to use Scroller and also set column widths | zsloan | |
| 2021-06-03 | Implemented Scroller with gene global search; for the time being this ↵ | zsloan | |
| disables the server-side processing, since that was assuming pagination and caused slow-downs when scrolling or sorting (likely because it's acting as if the full list of results are one page) | |||
| 2021-06-03 | Made the code for setting some trait fields (like additive, mean, ↵ | zsloan | |
| max_lrs_text) clearer and more consistent, and fixed issue where an error would be thrown if this_trait['locus_chr'] or this_trait['locus_mb'] was None (it's unnecessary to pass those values to the template to begin with, since they're just used to set this_trait['max_lrs_text'] | |||
| 2021-06-01 | Fixed issue that caused attribute alignments to be off by one position | zsloan | |
| 2021-06-01 | Made Genotype drop-down a little wider, since the genotype file names can be ↵ | zsloan | |
| longer | |||
| 2021-06-01 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing | zsloan | |
| 2021-06-01 | Make the container div for the trait table have a minimum width scaling off ↵ | zsloan | |
| of the trait table width, to avoid the border overlapping with the table | |||
| 2021-06-01 | templates: edit_trait: Use correct textarea "name" for post_pub_desc | BonfaceKilz | |
| 2021-06-01 | templates: edit_trait: Add "changed" class to hidden input values | BonfaceKilz | |
| When a form element changes, it's marked as changed. Only input elements with "changed" get submitted. Since we need to submit the "hidden" input fields, we add "changed" to them anyways. | |||
| 2021-06-01 | templates: edit_trait: Only submit form elements that have changed | BonfaceKilz | |
| We only submit form elements that have changed, and use that to update the relevant tables. See: https://stackoverflow.com/a/5221915 | |||
| 2021-05-28 | Added comment clarifying the situation with views.py imports | zsloan | |
| 2021-05-28 | Re-added collect import in views.py since it was removed before (I'm ↵ | zsloan | |
| guessing because it appeared to not be used, but it actually is used because it includes the collection endpoints | |||
| 2021-05-27 | Merge pull request #579 from zsloan/feature/rqtl_with_gn3 | zsloan | |
| Use GN3 API for R/qtl | |||
| 2021-05-27 | Fix the way Mock is initialized | zsloan | |
| 2021-05-27 | Change test_rqtl_mapping.py to account for full results being returned from ↵ | zsloan | |
| the GN3 request | |||
| 2021-05-27 | Fixed way MockGroup was initialized | zsloan | |
| 2021-05-27 | Forgot to import dataclass | zsloan | |
| 2021-05-27 | Fixed syntax mistake when creating dataclass in test_rqtl_mapping.py | zsloan | |
| 2021-05-27 | Removed parts of test_rqtl_mapping.py referring to process_perm_results and ↵ | zsloan | |
| process_rqtl_results since that functionality was moved to GN3 | |||
| 2021-05-27 | Updated test_run_mapping.py to account for attribute keys being checked as ↵ | zsloan | |
| lowercase, though not sure if this will fully fix the test | |||
| 2021-05-27 | Improved test_rqtl_mapping.py with Bonface's recommendation of uses dataclasses | zsloan | |
| 2021-05-27 | Make all attribute names lowercase to deal with situations where sometimes ↵ | zsloan | |
| they're lower-case and other times not | |||
| 2021-05-27 | Add code writing perm_strata to phenotype input file in rqtl_mapping.py + ↵ | zsloan | |
| fix issue in cofactors_to_dict where two variables were both called 'cofactors' | |||
| 2021-05-26 | doc: docker-container: Rename python3-genenetwork2 to genenetwork2 | BonfaceKilz | |
| See: https://is.gd/gHJvhe | |||
| 2021-05-26 | workflows: main: Use "bonfacekilz/genenetwork2:latest" docker image | BonfaceKilz | |
| 2021-05-26 | wqflask: views: Update comment when data is edited | BonfaceKilz | |
| For now the exact column that's edited isn't tracked. | |||
| 2021-05-26 | wqflask: views: Import "fetchone" & "update" from "gn3.db" | BonfaceKilz | |
| 2021-05-26 | Use @admin_login_required to only enable Rob to do edits to traits | BonfaceKilz | |
| * wqflask/wqflask/decorators.py (admin_login_required): New decorator. * wqflask/wqflask/views.py (edit_trait): Use admin_login_required decorator. | |||
| 2021-05-26 | wqflask: views: Add method that updates the trait | BonfaceKilz | |
| * wqflask/wqflask/views.py (update_trait): New function. | |||
| 2021-05-26 | templates: edit_trait: Submit publish_xref data | BonfaceKilz | |
| 2021-05-26 | wqflask: views: Remove unused imports | BonfaceKilz | |
| 2021-05-26 | wqflask: views: Make imports top-level | BonfaceKilz | |
| 2021-05-26 | templates: edit_trait: Make form functional(add ability to submit) | BonfaceKilz | |
| 2021-05-26 | wqflask: views: Add edit_trait page | BonfaceKilz | |
| Should add some some authentication logic to this later since it's not supposed to be accessible to everyone. | |||
| 2021-05-26 | templates: edit_trait: Update edit btn to point to editing endpoint | BonfaceKilz | |
| 2021-05-26 | wqflask: views: Add extra endpoint to display individual trait edit | BonfaceKilz | |
| * wqflask/wqflask/views.py (show_edit_trait_page): New function/ end-point. | |||
| 2021-05-26 | templates: show_trait_details: Add an "[edit]" button | BonfaceKilz | |
| 2021-05-26 | tests: test_gen_menu: Remove get_species | BonfaceKilz | |
| 2021-05-26 | api: gen_menu: Replace get_species with get_all_species from gn3 | BonfaceKilz | |
| * wqflask/wqflask/api/gen_menu.py (gen_dropdown_json): Use new `get_all_species` function. (get_species): Remove it. | |||
| 2021-05-26 | db: webqtlDatabaseFunction: Remove comment | BonfaceKilz | |
| 2021-05-26 | db: webqtlDatabaseFunction: Remove logger info | BonfaceKilz | |
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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