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2024-03-26Add new hidden input for metadata id.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-26Rename summary label to "edit-summary".Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-26Add function for saving metadata in git.Munyoki Kilyungi
* gn2/wqflask/edit.py (save_dataset_metadata): New function. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-26Add classified-under to hidden form inputs.Munyoki Kilyungi
* gn2/wqflask/templates/metadata/editor.html: Add "classified-under" form element. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-26Add conditional for accessionId in metadata editor template.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-26Correctly wrap the "__build_access_checker__" function.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-26Remove unused imports.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-26Rename "required_access" to "required_trait_access".Munyoki Kilyungi
* gn2/wqflask/decorators.py (required_access): Rename this to ... (required_trait_access): ... this. * gn2/wqflask/metadata_edits.py: Ditto. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-26Delete unused page.Munyoki Kilyungi
* gn2/wqflask/views.py (display_diffs_admin): Delete. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-26Remove unused imports.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-26Delete "edit_access_required" decorator.Munyoki Kilyungi
* gn2/wqflask/decorators.py (edit_access_required): Delete. * gn2/wqflask/resource_manager.py: Delete references to "edit_access_required". Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-26Integrate CKEditor into metadata editing.Munyoki Kilyungi
* gn2/wqflask/__init__.py: Register blueprint endpoint for metadata edits. * gn2/wqflask/edit.py (metadata_edit): New function. (save): Ditto. * gn2/wqflask/templates/metadata/dataset.html: New template. * gn2/wqflask/templates/metadata/editor.html: New template. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-22log full error messaging for gnqa ratingAlexander_Kabui
2024-03-22use icon for search historyAlexander_Kabui
2024-03-22add gnqa evaluation UIAlexander_Kabui
2024-03-22Mapping page: minor text editsPjotr Prins
2024-03-22Update ProbeSetSE table schema.Frederick Muriuki Muriithi
2024-03-21Fix issue where Haplotype band could overlap with Homology band (plus other ↵zsloan
spacing issues related to the Homology band) Change Homology track colors to be more color-blind friendly
2024-03-21Give more space for strain names in haplotype bandzsloan
2024-03-21Fix bug where scatterplot didn't work for temp traitszsloan
2024-03-18Merge pull request #835 from genenetwork/feature/pub-data-uiAlexander Kabui
add pub data UI
2024-03-18linnkify abstract and referencesAlexander_Kabui
2024-03-18add pumed search linkAlexander_Kabui
2024-03-18add pubdata uiAlexander_Kabui
2024-03-14Disable CaseAttributeId - because it needs an update to the databaseGN2
and it is not clear why. @bonfacem.
2024-03-13Make some improvements to the collections list templatezsloan
2024-03-13Add options to select by index/attr (instead of just block)zsloan
2024-03-07fix bugs.Frederick Muriuki Muriithi
2024-03-06Check whether `GN2_SETTINGS` is provided before using defaultFrederick Muriuki Muriithi
2024-03-06Use AUTH_SERVER_URL setting from flask.current_app not gn2.utility.toolsFrederick Muriuki Muriithi
2024-03-06Bug: Break circular importFrederick Muriuki Muriithi
2024-03-05disable login requirement for gnqa on cdAlexander_Kabui
* reason gnqa and gn-auth are currently unstable
2024-03-05Fix missed bug: Don't use `gn2.utility.tools` for configs.Frederick Muriuki Muriithi
2024-03-05configs: Fetch configs from app not `gn2.utility.tools`Frederick Muriuki Muriithi
Fetch configurations from the application, rather than from the `gn2.utility.tools` module that does not get the updated values from the secrets file.
2024-03-05Pick secrets from config file.Frederick Muriuki Muriithi
2024-03-04Include ALL html templates.Frederick Muriuki Muriithi
2024-03-02Doc database layoutPjotr Prins
2024-03-02doc: databasingPjotr Prins
2024-02-29Fix URI to queryFrederick Muriuki Muriithi
2024-02-21Merge pull request #834 from genenetwork/chores/replace-js-external-linksAlexander Kabui
Replacing JS External Links with Guix Packages
2024-02-21use font-awesome version 4.7.0Alexander_Kabui
2024-02-19Fix font pathszsloan
2024-02-16pep8 formattingAlexander_Kabui
2024-02-16Add gnqa error pageAlexander_Kabui
2024-02-16init check for user loginAlexander_Kabui
2024-02-16fix for gnqa-ui:replace gnqa history buttonAlexander_Kabui
2024-02-15replace emfed cdn with local static filesAlexander_Kabui
2024-02-15add emfed js file to static filesAlexander_Kabui
2024-02-15add emfed style file locallyAlexander_Kabui
2024-02-15fix font awesome package pathAlexander_Kabui